Variant report

Variant	rs1537133
Chromosome Location	chr20:22947853-22947854
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1331081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55783247	1.00[AMR][1000 genomes]
rs55964438	1.00[AMR][1000 genomes]
rs56978650	1.00[AMR][1000 genomes]
rs57610255	1.00[AMR][1000 genomes]
rs59053572	1.00[AMR][1000 genomes]
rs6036279	1.00[AFR][1000 genomes]
rs7266993	1.00[AMR][1000 genomes]
rs73901579	1.00[AMR][1000 genomes]
rs73901582	1.00[AMR][1000 genomes]
rs73901583	1.00[AMR][1000 genomes]
rs73901586	1.00[AMR][1000 genomes]
rs73901588	1.00[AMR][1000 genomes]
rs73901589	1.00[AMR][1000 genomes]
rs73901591	1.00[AMR][1000 genomes]
rs8123988	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22947000-22948600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr20:22947000-22948800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr20:22947200-22948600	Enhancers	NHEK	skin
4	chr20:22947200-22948800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr20:22947400-22948400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr20:22947400-22948600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr20:22947400-22948600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr20:22947400-22948600	Enhancers	HMEC	breast
9	chr20:22947600-22948000	Weak transcription	Esophagus	oesophagus
10	chr20:22947600-22948800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links