Variant report

Variant	rs1332182
Chromosome Location	chr9:21507082-21507083
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10811560	0.85[EUR][1000 genomes]
rs10965028	0.86[EUR][1000 genomes]
rs12346014	0.84[EUR][1000 genomes]
rs13283527	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13283671	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1332184	0.81[ASN][1000 genomes]
rs1332186	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1332187	0.86[EUR][1000 genomes]
rs1360526	0.86[EUR][1000 genomes]
rs1412392	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1412393	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1537275	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1537279	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1576793	0.92[CEU][hapmap]
rs1953032	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2210436	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2383192	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs4246868	0.86[EUR][1000 genomes]
rs4258083	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4587418	0.85[EUR][1000 genomes]
rs7848909	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7856413	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7856647	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
2	nsv466297	chr9:21391698-21507589	Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv613758	chr9:21391698-21507589	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv1030064	chr9:21455760-21524674	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	111 gene(s)	inside rSNPs	diseases
5	nsv1020445	chr9:21464962-21524162	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	109 gene(s)	inside rSNPs	diseases
6	nsv1020232	chr9:21464962-21524999	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
7	nsv892740	chr9:21471499-21551513	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA miRNA	110 gene(s)	inside rSNPs	diseases
8	nsv1031432	chr9:21472601-21608774	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
9	nsv540085	chr9:21472601-21608774	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	122 gene(s)	inside rSNPs	diseases
10	esv2757326	chr9:21499624-21526526	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases
11	esv2759680	chr9:21499624-21526526	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region miRNA	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21466000-21527600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:21494800-21527600	Weak transcription	Gastric	stomach
3	chr9:21503600-21508000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:21503600-21509400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:21503800-21509000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:21504200-21507800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:21504200-21507800	Weak transcription	Placenta	Placenta
8	chr9:21504600-21507200	Enhancers	Osteobl	bone
9	chr9:21504800-21508200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr9:21504800-21508600	Enhancers	Fetal Intestine Large	intestine
11	chr9:21504800-21509400	Enhancers	NH-A	brain
12	chr9:21504800-21509400	Enhancers	NHDF-Ad	bronchial
13	chr9:21504800-21509800	Enhancers	NHEK	skin
14	chr9:21504800-21510200	Enhancers	HMEC	breast
15	chr9:21505000-21507200	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr9:21505000-21507600	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr9:21505000-21508200	Enhancers	NHLF	lung
18	chr9:21505000-21510200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr9:21505200-21507200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
20	chr9:21505200-21508000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:21505200-21510200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:21505400-21507200	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:21505400-21508000	Enhancers	HSMM	muscle
24	chr9:21505600-21507200	Enhancers	Small Intestine	intestine
25	chr9:21505600-21508400	Enhancers	A549	lung
26	chr9:21505600-21509400	Enhancers	HUVEC	blood vessel
27	chr9:21505800-21507200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr9:21505800-21509400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr9:21506200-21508200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr9:21506400-21507400	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chr9:21506400-21507400	Enhancers	Duodenum Mucosa	Duodenum
32	chr9:21506600-21507200	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr9:21506600-21508000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr9:21506800-21507200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
35	chr9:21506800-21507200	Enhancers	H9 Cell Line	embryonic stem cell
36	chr9:21506800-21507200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr9:21506800-21507200	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr9:21506800-21507200	Enhancers	Adipose Nuclei	Adipose
39	chr9:21506800-21507400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:21506800-21507600	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr9:21506800-21507600	Enhancers	Stomach Mucosa	stomach
42	chr9:21506800-21507600	Enhancers	Hela-S3	cervix
43	chr9:21506800-21507800	Weak transcription	Fetal Intestine Small	intestine
44	chr9:21507000-21507200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr9:21507000-21507400	Enhancers	HSMMtube	muscle
46	chr9:21507000-21508800	Enhancers	Placenta Amnion	Placenta Amnion

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