Variant report

Variant	rs13324713
Chromosome Location	chr3:156024707-156024708
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156007615..156009116-chr3:156024508..156027118,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169282	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs28379919	1.00[AMR][1000 genomes]
rs58487185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9843027	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9847596	1.00[MEX][hapmap]
rs9854671	1.00[AMR][1000 genomes]
rs9864598	1.00[AMR][1000 genomes]
rs9865661	1.00[AMR][1000 genomes]
rs9877749	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156010000-156025400	Weak transcription	Pancreas	Pancrea
2	chr3:156021400-156035200	Weak transcription	Stomach Mucosa	stomach
3	chr3:156021800-156035800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:156022200-156025600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr3:156022400-156026400	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr3:156022400-156029200	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:156022600-156025200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:156022600-156025400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:156022800-156024800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:156022800-156024800	Weak transcription	Osteobl	bone
11	chr3:156022800-156025200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr3:156022800-156025400	Weak transcription	Hela-S3	cervix
13	chr3:156022800-156025400	Weak transcription	HSMM	muscle
14	chr3:156022800-156025600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:156022800-156025600	Weak transcription	Stomach Smooth Muscle	stomach
16	chr3:156022800-156035600	Weak transcription	Brain Anterior Caudate	brain
17	chr3:156023000-156025000	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr3:156023000-156025400	Weak transcription	HMEC	breast
19	chr3:156023000-156025400	Weak transcription	NH-A	brain
20	chr3:156023000-156025400	Weak transcription	NHDF-Ad	bronchial
21	chr3:156023200-156025400	Weak transcription	NHLF	lung
22	chr3:156023800-156029200	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr3:156024000-156024800	Genic enhancers	Aorta	Aorta
24	chr3:156024400-156026600	Enhancers	HUVEC	blood vessel
25	chr3:156024600-156025400	Weak transcription	Left Ventricle	heart
26	chr3:156024600-156025800	Enhancers	Fetal Muscle Leg	muscle
27	chr3:156024600-156025800	Weak transcription	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links