Variant report

Variant	rs58487185
Chromosome Location	chr3:156025505-156025506
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156007615..156009116-chr3:156024508..156027118,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169282	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13324713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28379919	1.00[AMR][1000 genomes]
rs9843027	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9854671	1.00[AMR][1000 genomes]
rs9864598	1.00[AMR][1000 genomes]
rs9865661	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156021400-156035200	Weak transcription	Stomach Mucosa	stomach
2	chr3:156021800-156035800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:156022200-156025600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:156022400-156026400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr3:156022400-156029200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr3:156022800-156025600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr3:156022800-156025600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:156022800-156035600	Weak transcription	Brain Anterior Caudate	brain
9	chr3:156023800-156029200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr3:156024400-156026600	Enhancers	HUVEC	blood vessel
11	chr3:156024600-156025800	Enhancers	Fetal Muscle Leg	muscle
12	chr3:156024600-156025800	Weak transcription	Right Ventricle	heart
13	chr3:156024800-156025600	Weak transcription	Aorta	Aorta
14	chr3:156024800-156026200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr3:156024800-156026200	Enhancers	Osteobl	bone
16	chr3:156025000-156026400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr3:156025200-156025600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:156025200-156026400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:156025400-156025600	Enhancers	Ovary	ovary
20	chr3:156025400-156025600	Enhancers	Pancreas	Pancrea
21	chr3:156025400-156026000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:156025400-156026000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:156025400-156026000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:156025400-156026000	Enhancers	Rectal Smooth Muscle	rectum
25	chr3:156025400-156026000	Enhancers	HSMM	muscle
26	chr3:156025400-156026000	Enhancers	NHDF-Ad	bronchial
27	chr3:156025400-156026200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr3:156025400-156026200	Enhancers	Left Ventricle	heart
29	chr3:156025400-156026200	Enhancers	HMEC	breast
30	chr3:156025400-156026200	Enhancers	NH-A	brain
31	chr3:156025400-156026200	Enhancers	NHLF	lung
32	chr3:156025400-156026400	Enhancers	Hela-S3	cervix
33	chr3:156025400-156026400	Enhancers	NHEK	skin

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