Variant report

Variant	rs28379919
Chromosome Location	chr3:156040155-156040156
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13324713	1.00[AMR][1000 genomes]
rs58487185	1.00[AMR][1000 genomes]
rs9843027	1.00[AMR][1000 genomes]
rs9854671	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9864598	1.00[AMR][1000 genomes]
rs9865661	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156036400-156041400	Weak transcription	Hela-S3	cervix
2	chr3:156037200-156040800	Enhancers	Brain Substantia Nigra	brain
3	chr3:156037600-156040200	Enhancers	Brain Anterior Caudate	brain
4	chr3:156037800-156040400	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr3:156039400-156040800	Enhancers	Brain Hippocampus Middle	brain
6	chr3:156039600-156040200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr3:156040000-156041400	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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