Variant report

Variant	rs9864598
Chromosome Location	chr3:156029366-156029367
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:156025571..156028067-chr3:156028592..156030728,2	MCF-7	breast:
2	chr3:156026382..156029375-chr3:156031485..156033087,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13324713	1.00[AMR][1000 genomes]
rs28379919	1.00[AMR][1000 genomes]
rs58487185	1.00[AMR][1000 genomes]
rs9843027	1.00[AMR][1000 genomes]
rs9854671	1.00[AMR][1000 genomes]
rs9865661	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014755	chr3:155889430-156411894	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv877682	chr3:156019961-156077514	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:156021400-156035200	Weak transcription	Stomach Mucosa	stomach
2	chr3:156021800-156035800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:156022800-156035600	Weak transcription	Brain Anterior Caudate	brain
4	chr3:156026000-156031200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:156026000-156031400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:156026200-156031200	Weak transcription	HMEC	breast
7	chr3:156026400-156031200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr3:156026400-156031200	Weak transcription	NHEK	skin
9	chr3:156026400-156038400	Weak transcription	Aorta	Aorta
10	chr3:156027800-156029400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:156028200-156032200	Weak transcription	Spleen	Spleen
12	chr3:156029200-156029400	Enhancers	Brain Cingulate Gyrus	brain
13	chr3:156029200-156029400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
14	chr3:156029200-156029800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr3:156029200-156029800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:156029200-156029800	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:156029200-156030000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:156029200-156030000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr3:156029200-156030000	Enhancers	H1 Cell Line	embryonic stem cell
20	chr3:156029200-156030000	Enhancers	H9 Cell Line	embryonic stem cell
21	chr3:156029200-156030000	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr3:156029200-156030000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr3:156029200-156030000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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