Variant report

Variant	rs13345528
Chromosome Location	chr19:44743723-44743724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44738727..44740500-chr19:44743424..44745617,2	K562	blood:
2	chr19:44737360..44739314-chr19:44742429..44745029,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10404357	1.00[EUR][1000 genomes]
rs10404927	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10417182	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11879265	1.00[AMR][1000 genomes]
rs16978966	1.00[AMR][1000 genomes]
rs2437021	1.00[EUR][1000 genomes]
rs2722645	1.00[EUR][1000 genomes]
rs2722649	1.00[EUR][1000 genomes]
rs28462219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28818931	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34863330	1.00[AMR][1000 genomes]
rs57369690	1.00[EUR][1000 genomes]
rs58935748	1.00[AMR][1000 genomes]
rs60852988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61185843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61233555	1.00[AMR][1000 genomes]
rs61744740	1.00[EUR][1000 genomes]
rs73553212	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553217	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553253	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73555119	1.00[EUR][1000 genomes]
rs73556274	1.00[AMR][1000 genomes]
rs73558239	1.00[EUR][1000 genomes]
rs73558248	1.00[AMR][1000 genomes]
rs73558286	1.00[AMR][1000 genomes]
rs73558298	1.00[AMR][1000 genomes]
rs73558301	1.00[AMR][1000 genomes]
rs73562181	1.00[AMR][1000 genomes]
rs73562187	1.00[AMR][1000 genomes]
rs73562192	1.00[AMR][1000 genomes]
rs73562196	1.00[AMR][1000 genomes]
rs73564027	1.00[EUR][1000 genomes]
rs73564035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564075	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564084	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73567972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73567974	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73569942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8107948	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8113493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
4	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44731000-44744400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
6	chr19:44731800-44744200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
7	chr19:44733800-44744200	ZNF genes & repeats	A549	lung
8	chr19:44737600-44744400	ZNF genes & repeats	Fetal Brain Female	brain
9	chr19:44740000-44746400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
12	chr19:44741000-44744000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:44741000-44745000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr19:44741000-44745600	Weak transcription	Brain Angular Gyrus	brain
15	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
16	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr19:44741200-44744000	Weak transcription	Rectal Smooth Muscle	rectum
18	chr19:44741200-44744000	Weak transcription	Dnd41	blood
19	chr19:44741200-44744200	Weak transcription	Placenta	Placenta
20	chr19:44741200-44745000	Weak transcription	HSMMtube	muscle
21	chr19:44741200-44745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr19:44741200-44748000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr19:44741200-44748000	Weak transcription	Fetal Brain Male	brain
24	chr19:44741400-44743800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr19:44741400-44743800	Weak transcription	Brain Germinal Matrix	brain
26	chr19:44741400-44745800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr19:44741400-44751800	Weak transcription	HSMM	muscle
28	chr19:44741800-44744200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr19:44741800-44744800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr19:44741800-44748600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr19:44742000-44746600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr19:44742200-44746600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
34	chr19:44742400-44744000	ZNF genes & repeats	Fetal Muscle Leg	muscle
35	chr19:44742400-44744400	ZNF genes & repeats	Aorta	Aorta
36	chr19:44742400-44744400	ZNF genes & repeats	Ovary	ovary
37	chr19:44742400-44745400	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr19:44742600-44744000	Weak transcription	Left Ventricle	heart
39	chr19:44742600-44745400	Weak transcription	Brain Hippocampus Middle	brain
40	chr19:44743000-44744400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
41	chr19:44743200-44744000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
42	chr19:44743200-44744400	ZNF genes & repeats	Primary B cells from cord blood	blood
43	chr19:44743200-44745800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr19:44743400-44743800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
45	chr19:44743400-44744400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
46	chr19:44743400-44744400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
47	chr19:44743400-44745400	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr19:44743400-44750800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr19:44743600-44744200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr19:44743600-44746200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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