Variant report

Variant	rs11879265
Chromosome Location	chr19:44552518-44552519
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44529555..44531861-chr19:44550598..44553119,2	MCF-7	breast:
2	chr19:44551957..44553956-chr19:44554058..44555985,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000178386	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10164312	1.00[EUR][1000 genomes]
rs10164320	1.00[EUR][1000 genomes]
rs10401773	1.00[EUR][1000 genomes]
rs10404050	1.00[EUR][1000 genomes]
rs10404791	1.00[EUR][1000 genomes]
rs10404927	1.00[AMR][1000 genomes]
rs10404999	1.00[EUR][1000 genomes]
rs10405366	1.00[EUR][1000 genomes]
rs10406116	1.00[AMR][1000 genomes]
rs10406704	1.00[AMR][1000 genomes]
rs10409400	1.00[EUR][1000 genomes]
rs10409475	1.00[EUR][1000 genomes]
rs10415104	1.00[AMR][1000 genomes]
rs10415885	1.00[EUR][1000 genomes]
rs10416624	1.00[AMR][1000 genomes]
rs10416649	1.00[EUR][1000 genomes]
rs10417182	1.00[AMR][1000 genomes]
rs10420015	1.00[EUR][1000 genomes]
rs10423177	1.00[AMR][1000 genomes]
rs11878317	1.00[EUR][1000 genomes]
rs11878320	1.00[EUR][1000 genomes]
rs11879733	1.00[EUR][1000 genomes]
rs11880330	1.00[EUR][1000 genomes]
rs11880794	1.00[EUR][1000 genomes]
rs11880826	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11881355	1.00[EUR][1000 genomes]
rs11882151	0.88[AFR][1000 genomes]
rs11882281	1.00[EUR][1000 genomes]
rs11883048	1.00[EUR][1000 genomes]
rs11883052	1.00[EUR][1000 genomes]
rs12983129	1.00[EUR][1000 genomes]
rs13343401	1.00[EUR][1000 genomes]
rs13345060	1.00[EUR][1000 genomes]
rs13345516	1.00[EUR][1000 genomes]
rs13345528	1.00[AMR][1000 genomes]
rs16976891	1.00[EUR][1000 genomes]
rs16976894	1.00[EUR][1000 genomes]
rs28462219	1.00[AMR][1000 genomes]
rs28591400	1.00[EUR][1000 genomes]
rs28818931	1.00[AMR][1000 genomes]
rs34493848	1.00[AMR][1000 genomes]
rs34863330	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55852649	1.00[EUR][1000 genomes]
rs57614626	1.00[EUR][1000 genomes]
rs57796743	1.00[EUR][1000 genomes]
rs57956437	1.00[EUR][1000 genomes]
rs58056761	1.00[EUR][1000 genomes]
rs58271953	1.00[EUR][1000 genomes]
rs58935748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59205113	1.00[EUR][1000 genomes]
rs59897069	1.00[AMR][1000 genomes]
rs59926292	1.00[EUR][1000 genomes]
rs60064087	1.00[EUR][1000 genomes]
rs60833312	1.00[EUR][1000 genomes]
rs60852988	1.00[AMR][1000 genomes]
rs61185843	1.00[AMR][1000 genomes]
rs61233555	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7253031	1.00[EUR][1000 genomes]
rs7254182	1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[EUR][1000 genomes]
rs7256304	1.00[EUR][1000 genomes]
rs73553212	1.00[AMR][1000 genomes]
rs73553217	1.00[AMR][1000 genomes]
rs73554168	1.00[EUR][1000 genomes]
rs73556256	1.00[EUR][1000 genomes]
rs73556274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556277	1.00[EUR][1000 genomes]
rs73556279	1.00[EUR][1000 genomes]
rs73556299	1.00[EUR][1000 genomes]
rs73558203	1.00[EUR][1000 genomes]
rs73558209	1.00[EUR][1000 genomes]
rs73558211	1.00[EUR][1000 genomes]
rs73558215	1.00[EUR][1000 genomes]
rs73558217	1.00[EUR][1000 genomes]
rs73558221	1.00[EUR][1000 genomes]
rs73558222	1.00[EUR][1000 genomes]
rs73558227	1.00[EUR][1000 genomes]
rs73558248	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558256	1.00[EUR][1000 genomes]
rs73558264	1.00[EUR][1000 genomes]
rs73558286	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73562181	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73562184	1.00[EUR][1000 genomes]
rs73562187	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73562192	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73562196	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564015	1.00[EUR][1000 genomes]
rs73564035	1.00[AMR][1000 genomes]
rs73564041	1.00[AMR][1000 genomes]
rs73564053	1.00[AMR][1000 genomes]
rs73564075	1.00[AMR][1000 genomes]
rs73564084	1.00[AMR][1000 genomes]
rs73564093	1.00[AMR][1000 genomes]
rs73567972	1.00[AMR][1000 genomes]
rs73567974	1.00[AMR][1000 genomes]
rs73569942	1.00[AMR][1000 genomes]
rs73932846	1.00[EUR][1000 genomes]
rs8100906	1.00[EUR][1000 genomes]
rs8100990	1.00[EUR][1000 genomes]
rs8101607	1.00[EUR][1000 genomes]
rs8102859	1.00[EUR][1000 genomes]
rs8107948	1.00[AMR][1000 genomes]
rs8113493	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links