Variant report

Variant	rs10406704
Chromosome Location	chr19:44731653-44731654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10404357	1.00[EUR][1000 genomes]
rs10404927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10410532	0.82[AFR][1000 genomes]
rs10415104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10417182	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11879265	1.00[AMR][1000 genomes]
rs13345528	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16978966	1.00[AMR][1000 genomes]
rs2437021	1.00[EUR][1000 genomes]
rs2722645	1.00[EUR][1000 genomes]
rs2722649	1.00[EUR][1000 genomes]
rs28462219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28818931	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34863330	1.00[AMR][1000 genomes]
rs57369690	1.00[EUR][1000 genomes]
rs58935748	1.00[AMR][1000 genomes]
rs60852988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61185843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61233555	1.00[AMR][1000 genomes]
rs73553212	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553217	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553253	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73555119	1.00[EUR][1000 genomes]
rs73556274	1.00[AMR][1000 genomes]
rs73558239	1.00[EUR][1000 genomes]
rs73558248	1.00[AMR][1000 genomes]
rs73558286	1.00[AMR][1000 genomes]
rs73558298	1.00[AMR][1000 genomes]
rs73558301	1.00[AMR][1000 genomes]
rs73562181	1.00[AMR][1000 genomes]
rs73562187	1.00[AMR][1000 genomes]
rs73562192	1.00[AMR][1000 genomes]
rs73562196	1.00[AMR][1000 genomes]
rs73564027	1.00[EUR][1000 genomes]
rs73564035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564093	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73567972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73567974	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73569942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8107948	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8113493	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3322960	chr19:44731599-44732315	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44717400-44739000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:44717600-44739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:44717800-44732200	Weak transcription	Stomach Mucosa	stomach
4	chr19:44718200-44732400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr19:44718200-44732400	Weak transcription	K562	blood
6	chr19:44718200-44732600	Weak transcription	HepG2	liver
7	chr19:44718200-44732800	Weak transcription	HMEC	breast
8	chr19:44718200-44738800	Weak transcription	Hela-S3	cervix
9	chr19:44718400-44732400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr19:44718400-44736400	Weak transcription	HUVEC	blood vessel
11	chr19:44722000-44732000	Weak transcription	Colonic Mucosa	Colon
12	chr19:44722000-44732400	Weak transcription	Fetal Heart	heart
13	chr19:44722400-44731800	Weak transcription	Primary B cells from cord blood	blood
14	chr19:44722800-44732000	Weak transcription	Brain Cingulate Gyrus	brain
15	chr19:44723200-44732400	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr19:44723400-44731800	Weak transcription	Left Ventricle	heart
17	chr19:44723400-44731800	Weak transcription	Right Ventricle	heart
18	chr19:44723600-44731800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr19:44723600-44731800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
20	chr19:44723600-44731800	Weak transcription	Brain Anterior Caudate	brain
21	chr19:44723600-44731800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr19:44723600-44731800	Weak transcription	Fetal Brain Male	brain
23	chr19:44723600-44731800	Weak transcription	Fetal Thymus	thymus
24	chr19:44723600-44732000	Weak transcription	Brain Hippocampus Middle	brain
25	chr19:44723600-44732400	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr19:44723600-44732600	Weak transcription	Brain Angular Gyrus	brain
27	chr19:44723600-44732600	Weak transcription	NHLF	lung
28	chr19:44723600-44738000	Weak transcription	NHEK	skin
29	chr19:44723800-44731800	Weak transcription	Placenta	Placenta
30	chr19:44723800-44732400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr19:44723800-44732400	Weak transcription	HSMM	muscle
32	chr19:44723800-44732600	Weak transcription	Osteobl	bone
33	chr19:44723800-44735800	Weak transcription	NH-A	brain
34	chr19:44729800-44733600	ZNF genes & repeats	Brain Germinal Matrix	brain
35	chr19:44729800-44734800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr19:44729800-44735000	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
37	chr19:44729800-44735800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
38	chr19:44729800-44741000	ZNF genes & repeats	Lung	lung
39	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
40	chr19:44730000-44732800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr19:44730000-44733000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
42	chr19:44730000-44733200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
43	chr19:44730000-44735000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr19:44730000-44737000	ZNF genes & repeats	Fetal Muscle Leg	muscle
45	chr19:44730000-44741200	ZNF genes & repeats	Ovary	ovary
46	chr19:44730000-44741400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
47	chr19:44730000-44742000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
48	chr19:44730000-44743600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr19:44730000-44745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver

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