Variant report

Variant	rs73553212
Chromosome Location	chr19:44741956-44741957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44732822..44734810-chr19:44741387..44743469,2	K562	blood:
2	chr19:44739640..44742432-chr19:44813683..44816580,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10404357	1.00[EUR][1000 genomes]
rs10404927	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406116	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10406704	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10415104	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10416624	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10417182	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10423177	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11879265	1.00[AMR][1000 genomes]
rs13345528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16978966	1.00[AMR][1000 genomes]
rs2437021	1.00[EUR][1000 genomes]
rs2722645	1.00[EUR][1000 genomes]
rs2722649	1.00[EUR][1000 genomes]
rs28462219	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28818931	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34863330	1.00[AMR][1000 genomes]
rs57369690	1.00[EUR][1000 genomes]
rs58935748	1.00[AMR][1000 genomes]
rs60852988	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61185843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61233555	1.00[AMR][1000 genomes]
rs73553217	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73553253	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73555119	1.00[EUR][1000 genomes]
rs73556274	1.00[AMR][1000 genomes]
rs73558239	1.00[EUR][1000 genomes]
rs73558248	1.00[AMR][1000 genomes]
rs73558286	1.00[AMR][1000 genomes]
rs73558298	1.00[AMR][1000 genomes]
rs73558301	1.00[AMR][1000 genomes]
rs73562181	1.00[AMR][1000 genomes]
rs73562187	1.00[AMR][1000 genomes]
rs73562192	1.00[AMR][1000 genomes]
rs73562196	1.00[AMR][1000 genomes]
rs73564027	1.00[EUR][1000 genomes]
rs73564035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564041	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564053	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564075	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564084	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73564093	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73567972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73567974	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73569942	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8107948	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8113493	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44742000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr19:44730000-44743600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:44730000-44745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
6	chr19:44730200-44743000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
7	chr19:44730200-44743400	ZNF genes & repeats	Fetal Lung	lung
8	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
9	chr19:44730400-44743400	Strong transcription	Cortex derived primary cultured neurospheres	brain
10	chr19:44731000-44742000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr19:44731000-44744400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
12	chr19:44731400-44742000	ZNF genes & repeats	Fetal Intestine Small	intestine
13	chr19:44731800-44744200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:44733800-44744200	ZNF genes & repeats	A549	lung
15	chr19:44735600-44742200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
16	chr19:44737600-44744400	ZNF genes & repeats	Fetal Brain Female	brain
17	chr19:44738000-44742000	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr19:44738000-44742600	ZNF genes & repeats	Brain Hippocampus Middle	brain
19	chr19:44738000-44742600	ZNF genes & repeats	Psoas Muscle	Psoas
20	chr19:44740000-44746400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr19:44740200-44742000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
24	chr19:44741000-44742000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr19:44741000-44742400	Weak transcription	Pancreas	Pancrea
26	chr19:44741000-44742600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr19:44741000-44742600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr19:44741000-44742600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr19:44741000-44743200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr19:44741000-44743400	Weak transcription	Thymus	Thymus
31	chr19:44741000-44744000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:44741000-44745000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr19:44741000-44745600	Weak transcription	Brain Angular Gyrus	brain
34	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
35	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr19:44741200-44742000	Strong transcription	Primary B cells from cord blood	blood
37	chr19:44741200-44742400	Weak transcription	Fetal Thymus	thymus
38	chr19:44741200-44742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr19:44741200-44742800	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr19:44741200-44742800	Weak transcription	HepG2	liver
41	chr19:44741200-44742800	Weak transcription	NHEK	skin
42	chr19:44741200-44743000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr19:44741200-44743000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr19:44741200-44743000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr19:44741200-44743400	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr19:44741200-44744000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr19:44741200-44744000	Weak transcription	Dnd41	blood
48	chr19:44741200-44744200	Weak transcription	Placenta	Placenta
49	chr19:44741200-44745000	Weak transcription	HSMMtube	muscle
50	chr19:44741200-44745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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