Variant report

Variant	rs11880794
Chromosome Location	chr19:44561663-44561664
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10164312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10164320	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10401773	1.00[EUR][1000 genomes]
rs10404050	1.00[EUR][1000 genomes]
rs10404791	1.00[EUR][1000 genomes]
rs10404999	1.00[EUR][1000 genomes]
rs10405366	1.00[EUR][1000 genomes]
rs10409400	1.00[EUR][1000 genomes]
rs10409475	1.00[EUR][1000 genomes]
rs10415885	1.00[EUR][1000 genomes]
rs10416649	1.00[EUR][1000 genomes]
rs10420015	1.00[EUR][1000 genomes]
rs11878317	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11878320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11879265	1.00[EUR][1000 genomes]
rs11879733	1.00[EUR][1000 genomes]
rs11880330	1.00[EUR][1000 genomes]
rs11880826	1.00[EUR][1000 genomes]
rs11881355	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11882281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11883048	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11883052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11883398	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12983129	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13343401	1.00[EUR][1000 genomes]
rs13345060	1.00[EUR][1000 genomes]
rs13345516	1.00[EUR][1000 genomes]
rs16976891	1.00[EUR][1000 genomes]
rs16976894	1.00[EUR][1000 genomes]
rs28591400	1.00[EUR][1000 genomes]
rs34863330	1.00[EUR][1000 genomes]
rs55852649	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57614626	1.00[EUR][1000 genomes]
rs57796743	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57956437	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58056761	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58271953	1.00[EUR][1000 genomes]
rs58935748	1.00[EUR][1000 genomes]
rs59205113	1.00[EUR][1000 genomes]
rs59926292	1.00[EUR][1000 genomes]
rs60064087	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60833312	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61233555	1.00[EUR][1000 genomes]
rs7253031	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7254182	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7256304	1.00[EUR][1000 genomes]
rs73554168	1.00[EUR][1000 genomes]
rs73556256	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556274	1.00[EUR][1000 genomes]
rs73556277	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556279	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556299	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558203	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558209	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558212	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558217	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558221	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558222	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558227	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558248	1.00[EUR][1000 genomes]
rs73558256	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558264	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558286	1.00[EUR][1000 genomes]
rs73558298	1.00[EUR][1000 genomes]
rs73558301	1.00[EUR][1000 genomes]
rs73562181	1.00[EUR][1000 genomes]
rs73562184	1.00[EUR][1000 genomes]
rs73562187	1.00[EUR][1000 genomes]
rs73562192	1.00[EUR][1000 genomes]
rs73562196	1.00[EUR][1000 genomes]
rs73564015	1.00[EUR][1000 genomes]
rs73932846	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8100906	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8100990	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8101607	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8102859	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44556600-44564600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr19:44557000-44561800	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr19:44557000-44561800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr19:44557000-44561800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr19:44557000-44561800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr19:44557000-44561800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr19:44557000-44561800	Weak transcription	Aorta	Aorta
8	chr19:44557000-44561800	Weak transcription	Placenta	Placenta
9	chr19:44557000-44565000	Weak transcription	Psoas Muscle	Psoas
10	chr19:44557000-44566800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr19:44557000-44567400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr19:44557000-44567400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr19:44557000-44567600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr19:44557000-44568800	Weak transcription	HMEC	breast
15	chr19:44557000-44570200	Weak transcription	HUVEC	blood vessel
16	chr19:44557000-44570200	Weak transcription	NHDF-Ad	bronchial
17	chr19:44557000-44575600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr19:44557200-44561800	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr19:44557200-44562600	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr19:44557200-44565600	Weak transcription	NHLF	lung
21	chr19:44557400-44561800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr19:44557400-44561800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr19:44557400-44561800	Weak transcription	Rectal Smooth Muscle	rectum
24	chr19:44557400-44561800	Weak transcription	Dnd41	blood
25	chr19:44557400-44561800	Weak transcription	HepG2	liver
26	chr19:44557400-44564400	Weak transcription	Fetal Heart	heart
27	chr19:44557400-44565000	Weak transcription	Small Intestine	intestine
28	chr19:44557400-44565000	Weak transcription	NH-A	brain
29	chr19:44557400-44570000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr19:44557400-44570200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr19:44557600-44564800	Weak transcription	Fetal Brain Male	brain
32	chr19:44557800-44561800	Weak transcription	Right Ventricle	heart
33	chr19:44558200-44571800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr19:44558200-44573200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr19:44558200-44575600	ZNF genes & repeats	Liver	Liver
36	chr19:44558800-44561800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr19:44558800-44563800	Strong transcription	Rectal Mucosa Donor 29	rectum
38	chr19:44558800-44567800	Strong transcription	Stomach Smooth Muscle	stomach
39	chr19:44558800-44572800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr19:44559000-44561800	Strong transcription	Skeletal Muscle Female	skeletal muscle
41	chr19:44559000-44565200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
42	chr19:44559200-44563000	Strong transcription	Ovary	ovary
43	chr19:44559200-44569000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr19:44559200-44569000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr19:44559200-44569400	Strong transcription	Fetal Stomach	stomach
46	chr19:44559400-44561800	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr19:44559400-44561800	Weak transcription	HSMM	muscle
48	chr19:44559400-44562000	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr19:44559400-44565400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr19:44559400-44565800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links