Variant report

Variant	rs11882281
Chromosome Location	chr19:44556413-44556414
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:44554851..44557017-chr19:44574695..44576778,3	MCF-7	breast:
2	chr19:44555396..44557599-chr19:44598429..44600981,2	MCF-7	breast:
3	chr19:44554677..44558669-chr19:44574332..44578828,6	MCF-7	breast:
4	chr19:44487777..44490285-chr19:44555817..44558004,3	MCF-7	breast:
5	chr19:44555737..44557669-chr19:44596681..44600019,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204920	Chromatin interaction
ENSG00000186026	Chromatin interaction
ENSG00000267680	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10164312	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10164320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10401773	1.00[EUR][1000 genomes]
rs10404050	1.00[EUR][1000 genomes]
rs10404791	1.00[EUR][1000 genomes]
rs10404999	1.00[EUR][1000 genomes]
rs10405366	1.00[EUR][1000 genomes]
rs10409400	1.00[EUR][1000 genomes]
rs10409475	1.00[EUR][1000 genomes]
rs10415885	1.00[EUR][1000 genomes]
rs10416649	1.00[EUR][1000 genomes]
rs10420015	1.00[EUR][1000 genomes]
rs11878317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11878320	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11879265	1.00[EUR][1000 genomes]
rs11879733	1.00[EUR][1000 genomes]
rs11880330	1.00[EUR][1000 genomes]
rs11880794	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11880826	1.00[EUR][1000 genomes]
rs11881355	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11883048	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11883052	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11883398	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12983129	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13343401	1.00[EUR][1000 genomes]
rs13345060	1.00[EUR][1000 genomes]
rs13345516	1.00[EUR][1000 genomes]
rs16976891	1.00[EUR][1000 genomes]
rs16976894	1.00[EUR][1000 genomes]
rs28591400	1.00[EUR][1000 genomes]
rs34863330	1.00[EUR][1000 genomes]
rs55852649	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57614626	1.00[EUR][1000 genomes]
rs57796743	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57956437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58056761	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58271953	1.00[EUR][1000 genomes]
rs58935748	1.00[EUR][1000 genomes]
rs59205113	1.00[EUR][1000 genomes]
rs59926292	1.00[EUR][1000 genomes]
rs60064087	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60833312	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61233555	1.00[EUR][1000 genomes]
rs7253031	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7254182	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7256304	1.00[EUR][1000 genomes]
rs73554168	1.00[EUR][1000 genomes]
rs73556256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556274	1.00[EUR][1000 genomes]
rs73556277	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556279	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73556299	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558203	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558209	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558211	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558212	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73558215	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558217	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558221	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558222	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558227	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558248	1.00[EUR][1000 genomes]
rs73558256	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558264	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73558286	1.00[EUR][1000 genomes]
rs73558298	1.00[EUR][1000 genomes]
rs73558301	1.00[EUR][1000 genomes]
rs73562181	1.00[EUR][1000 genomes]
rs73562184	1.00[EUR][1000 genomes]
rs73562187	1.00[EUR][1000 genomes]
rs73562192	1.00[EUR][1000 genomes]
rs73562196	1.00[EUR][1000 genomes]
rs73564015	1.00[EUR][1000 genomes]
rs73932846	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8100906	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8100990	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8101607	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8102859	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44554800-44556800	Active TSS	H1 Cell Line	embryonic stem cell
2	chr19:44554800-44556800	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr19:44554800-44556800	Active TSS	Psoas Muscle	Psoas
4	chr19:44554800-44557000	Active TSS	Colonic Mucosa	Colon
5	chr19:44554800-44557000	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr19:44554800-44557200	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr19:44554800-44557200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:44555000-44556600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr19:44555000-44556800	Active TSS	Primary T killer memory cells from peripheral blood	blood
10	chr19:44555000-44556800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr19:44555000-44556800	Active TSS	Duodenum Smooth Muscle	Duodenum
12	chr19:44555000-44556800	Active TSS	Fetal Kidney	kidney
13	chr19:44555000-44556800	Active TSS	Thymus	Thymus
14	chr19:44555000-44556800	Active TSS	A549	lung
15	chr19:44555000-44557000	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr19:44555000-44557200	Active TSS	HUES64 Cell Line	embryonic stem cell
17	chr19:44555000-44557200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
18	chr19:44555000-44557200	Active TSS	Fetal Intestine Large	intestine
19	chr19:44555000-44557400	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr19:44555000-44557600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr19:44555200-44556600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
22	chr19:44555200-44556600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr19:44555200-44556600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
24	chr19:44555200-44556800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr19:44555200-44556800	Active TSS	Stomach Mucosa	stomach
26	chr19:44555200-44556800	Active TSS	K562	blood
27	chr19:44555200-44556800	Active TSS	NHDF-Ad	bronchial
28	chr19:44555200-44557000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
29	chr19:44555200-44557000	Active TSS	iPS-15b Cell Line	embryonic stem cell
30	chr19:44555200-44557000	Active TSS	Primary T helper naive cells from peripheral blood	blood
31	chr19:44555200-44557600	Active TSS	Fetal Intestine Small	intestine
32	chr19:44555200-44557600	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr19:44555400-44556600	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
34	chr19:44555400-44556600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
35	chr19:44555400-44556800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr19:44555400-44556800	Active TSS	H9 Cell Line	embryonic stem cell
37	chr19:44555400-44556800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr19:44555400-44556800	Active TSS	Fetal Lung	lung
39	chr19:44555400-44556800	Active TSS	Placenta Amnion	Placenta Amnion
40	chr19:44555400-44557000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr19:44555400-44557400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr19:44555600-44556600	Bivalent/Poised TSS	Brain Germinal Matrix	brain
43	chr19:44555600-44556600	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr19:44555600-44556600	Active TSS	Small Intestine	intestine
45	chr19:44555600-44556600	Active TSS	Spleen	Spleen
46	chr19:44555600-44556800	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr19:44555600-44556800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
48	chr19:44555600-44556800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
49	chr19:44555600-44556800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr19:44555600-44556800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin

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