Variant report

Variant	rs13355103
Chromosome Location	chr5:142762978-142762979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:142754969..142757845-chr5:142761710..142763692,2	K562	blood:
2	chr5:142761002..142763561-chr5:142778835..142781443,2	K562	blood:
3	chr5:142761935..142764704-chr5:142767588..142769463,3	K562	blood:
4	chr5:142761599..142763708-chr5:142781851..142783777,2	K562	blood:

Variant related genes	Relation type
ENSG00000113580	Chromatin interaction

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:111)

rs_ID	r²[population]
rs10035222	0.94[ASN][1000 genomes]
rs10036628	0.87[AFR][1000 genomes]
rs10036734	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10037525	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10037693	1.00[YRI][hapmap]
rs10038016	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10038464	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10038827	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10039663	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10040972	0.87[AFR][1000 genomes]
rs10041074	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10041957	0.87[AFR][1000 genomes]
rs10042038	0.87[AFR][1000 genomes]
rs10042644	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10042897	0.87[AFR][1000 genomes]
rs10042903	1.00[LWK][hapmap];0.87[AFR][1000 genomes]
rs10042945	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10043423	1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10043662	1.00[AFR][1000 genomes]
rs10043707	0.94[ASN][1000 genomes]
rs10045200	0.87[AFR][1000 genomes]
rs10045381	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10051482	1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10053200	0.87[AFR][1000 genomes]
rs10053963	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10054283	1.00[AFR][1000 genomes]
rs10054713	1.00[AFR][1000 genomes]
rs10055443	1.00[AFR][1000 genomes]
rs10055444	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10055574	1.00[AFR][1000 genomes]
rs10060741	1.00[AFR][1000 genomes]
rs10065326	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10066267	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10068126	1.00[AFR][1000 genomes]
rs10071869	1.00[AFR][1000 genomes]
rs10072193	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10073248	0.87[AFR][1000 genomes]
rs10076037	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs10076665	0.94[ASN][1000 genomes]
rs10078410	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10079976	0.87[AFR][1000 genomes]
rs10440742	1.00[AFR][1000 genomes]
rs10477204	0.87[AFR][1000 genomes]
rs10477206	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10477207	0.87[AFR][1000 genomes]
rs10477208	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10477209	1.00[AFR][1000 genomes]
rs10482604	0.84[ASN][1000 genomes]
rs10482612	0.87[AFR][1000 genomes]
rs10482617	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs10482645	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10482646	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10482694	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10482701	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[ASN][1000 genomes]
rs12386466	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13306584	0.94[ASN][1000 genomes]
rs13306586	0.94[ASN][1000 genomes]
rs13306588	0.94[ASN][1000 genomes]
rs13353867	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13353891	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs13355270	0.87[AFR][1000 genomes]
rs13356723	1.00[AFR][1000 genomes]
rs13356889	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs13358709	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13358784	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13359753	0.87[AFR][1000 genomes]
rs13360160	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs13360865	1.00[YRI][hapmap]
rs13361140	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs13361442	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs2301177	1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[ASN][1000 genomes]
rs28392717	1.00[AFR][1000 genomes]
rs28538427	1.00[AFR][1000 genomes]
rs28546630	1.00[AFR][1000 genomes]
rs28609103	1.00[AFR][1000 genomes]
rs28791803	0.87[AFR][1000 genomes]
rs28822503	0.87[AFR][1000 genomes]
rs28865014	0.87[AFR][1000 genomes]
rs3822376	0.94[ASN][1000 genomes]
rs61751160	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs61751174	1.00[AFR][1000 genomes]
rs61751243	1.00[AFR][1000 genomes]
rs61751246	1.00[AFR][1000 genomes]
rs61751254	1.00[AFR][1000 genomes]
rs61752260	0.87[AFR][1000 genomes]
rs61757448	1.00[AFR][1000 genomes]
rs61757449	1.00[AFR][1000 genomes]
rs6192	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs66697623	0.94[ASN][1000 genomes]
rs67300719	0.94[ASN][1000 genomes]
rs67902340	0.94[ASN][1000 genomes]
rs72481837	0.94[ASN][1000 genomes]
rs72481854	0.94[ASN][1000 genomes]
rs72542755	0.94[ASN][1000 genomes]
rs72542756	0.94[ASN][1000 genomes]
rs72542757	0.94[ASN][1000 genomes]
rs72542758	0.94[ASN][1000 genomes]
rs72542769	0.83[ASN][1000 genomes]
rs72557305	1.00[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs72557310	0.84[ASN][1000 genomes]
rs9324911	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9324912	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9324913	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9324914	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9324915	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9324917	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs9324919	1.00[AFR][1000 genomes]
rs9324920	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9324922	1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9324923	1.00[YRI][hapmap]
rs9654496	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023976	chr5:142692062-142813664	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:142725000-142764200	Weak transcription	Lung	lung
2	chr5:142739400-142763600	Weak transcription	Thymus	Thymus
3	chr5:142741600-142771600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr5:142743200-142764200	Weak transcription	HepG2	liver
5	chr5:142745400-142764200	Weak transcription	Fetal Stomach	stomach
6	chr5:142750400-142764200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:142751200-142764600	Weak transcription	Gastric	stomach
8	chr5:142752400-142764600	Weak transcription	Brain Angular Gyrus	brain
9	chr5:142752800-142763600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr5:142753200-142763000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:142753600-142763600	Weak transcription	Primary B cells from peripheral blood	blood
12	chr5:142754800-142764000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr5:142755400-142763400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr5:142756600-142766400	Weak transcription	Pancreas	Pancrea
15	chr5:142756800-142763200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
16	chr5:142757000-142763800	Weak transcription	Primary T cells fromperipheralblood	blood
17	chr5:142757000-142763800	Weak transcription	Right Atrium	heart
18	chr5:142757000-142764200	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:142757000-142764200	Weak transcription	Ovary	ovary
20	chr5:142757200-142763000	Weak transcription	HSMMtube	muscle
21	chr5:142757200-142763600	Weak transcription	Brain Hippocampus Middle	brain
22	chr5:142757200-142764200	Weak transcription	Aorta	Aorta
23	chr5:142757200-142764200	Weak transcription	Spleen	Spleen
24	chr5:142757400-142763600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr5:142757400-142764200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr5:142757400-142764200	Weak transcription	Placenta	Placenta
27	chr5:142757400-142764200	Weak transcription	Hela-S3	cervix
28	chr5:142757600-142763600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr5:142757600-142763800	Weak transcription	HMEC	breast
30	chr5:142757600-142768400	Weak transcription	Colon Smooth Muscle	Colon
31	chr5:142757800-142763600	Weak transcription	Adipose Nuclei	Adipose
32	chr5:142757800-142764200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr5:142757800-142764200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr5:142758200-142764200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr5:142758600-142763800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr5:142758800-142764600	Enhancers	Primary T helper naive cells from peripheral blood	blood
37	chr5:142759200-142763000	Weak transcription	Fetal Intestine Large	intestine
38	chr5:142759200-142763600	Weak transcription	Fetal Intestine Small	intestine
39	chr5:142759400-142763600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr5:142759400-142764000	Weak transcription	Brain Anterior Caudate	brain
41	chr5:142759400-142764200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:142759600-142764000	Weak transcription	Brain Cingulate Gyrus	brain
43	chr5:142760200-142764200	Weak transcription	NHLF	lung
44	chr5:142760400-142763400	Weak transcription	Osteobl	bone
45	chr5:142760400-142763600	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr5:142760400-142764000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr5:142760400-142764800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr5:142760600-142763600	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr5:142761000-142763000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
50	chr5:142761200-142767200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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