The 2.0 version of rSNPBase

Variant report

Variant rs72542769
Chromosome Location chr5:142658378-142658379
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:93 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:142646600-142672400 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr5:142647800-142658800 Weak transcription Hela-S3 cervix
3 chr5:142650000-142674000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr5:142650600-142677200 Weak transcription Aorta Aorta
5 chr5:142650800-142659200 Weak transcription Thymus Thymus
6 chr5:142652200-142669800 Weak transcription Left Ventricle heart
7 chr5:142652400-142659400 Weak transcription Fetal Muscle Leg muscle
8 chr5:142652800-142660200 Weak transcription NH-A brain
9 chr5:142653000-142658400 Weak transcription Fetal Lung lung
10 chr5:142653000-142671200 Weak transcription Brain Hippocampus Middle brain
11 chr5:142653200-142674800 Weak transcription Rectal Smooth Muscle rectum
12 chr5:142654000-142659400 Weak transcription Breast Myoepithelial Primary Cells Breast
13 chr5:142654200-142659200 Weak transcription HSMMtube muscle
14 chr5:142654600-142659400 Strong transcription GM12878-XiMat blood
15 chr5:142654600-142666600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
16 chr5:142654800-142658400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
17 chr5:142654800-142659400 Weak transcription NHLF lung
18 chr5:142654800-142663600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
19 chr5:142655000-142664800 Weak transcription NHEK skin
20 chr5:142655000-142669800 Weak transcription Primary T killer naive cells fromperipheralblood blood
21 chr5:142655000-142671600 Weak transcription K562 blood
22 chr5:142655200-142662400 Weak transcription Skeletal Muscle Female skeletal muscle
23 chr5:142655200-142674000 Weak transcription Rectal Mucosa Donor 31 rectum
24 chr5:142655200-142674200 Weak transcription Brain Angular Gyrus brain
25 chr5:142655400-142661400 Weak transcription Placenta Placenta
26 chr5:142655400-142672600 Weak transcription Brain Inferior Temporal Lobe brain
27 chr5:142655600-142658800 Weak transcription Fetal Muscle Trunk muscle
28 chr5:142655800-142658600 Weak transcription Placenta Amnion Placenta Amnion
29 chr5:142655800-142660600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
30 chr5:142655800-142662000 Weak transcription Primary T helper naive cells fromperipheralblood blood
31 chr5:142655800-142664600 Strong transcription NHDF-Ad bronchial
32 chr5:142655800-142669800 Weak transcription Skeletal Muscle Male skeletal muscle
33 chr5:142655800-142670200 Weak transcription Sigmoid Colon Sigmoid Colon
34 chr5:142655800-142671800 Weak transcription Psoas Muscle Psoas
35 chr5:142655800-142677200 Weak transcription Spleen Spleen
36 chr5:142655800-142699200 Strong transcription Dnd41 blood
37 chr5:142656000-142658400 Weak transcription Primary T helper cells PMA-I stimulated --
38 chr5:142656000-142659800 Enhancers Liver Liver
39 chr5:142656000-142660200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
40 chr5:142656000-142664000 Strong transcription HSMM muscle
41 chr5:142656000-142677400 Weak transcription Gastric stomach
42 chr5:142656200-142658400 Weak transcription Primary neutrophils fromperipheralblood blood
43 chr5:142656200-142658400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
44 chr5:142656400-142658600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
45 chr5:142656400-142659200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
46 chr5:142656400-142659600 Strong transcription Primary hematopoietic stem cells blood
47 chr5:142656400-142664400 Strong transcription Primary T helper cells fromperipheralblood blood
48 chr5:142656600-142658800 Weak transcription Fetal Intestine Large intestine
49 chr5:142656600-142660400 Strong transcription Monocytes-CD14+_RO01746 blood
50 chr5:142656600-142660800 Strong transcription Primary B cells from cord blood blood

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Last update: Aug 31, 2015