Variant report

Variant	rs13359244
Chromosome Location	chr5:36182892-36182893
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36180379..36183249-chr5:36239593..36241776,2	K562	blood:

Variant related genes	Relation type
ENSG00000152620	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10041692	0.86[EUR][1000 genomes]
rs10045424	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10053940	0.86[EUR][1000 genomes]
rs10060125	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs10062736	0.86[EUR][1000 genomes]
rs10069006	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10076051	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs10079910	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10473003	1.00[YRI][hapmap]
rs10473004	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs10473005	0.89[CHD][hapmap];0.86[EUR][1000 genomes]
rs16902914	0.86[CHB][hapmap];0.89[CHD][hapmap];0.86[EUR][1000 genomes]
rs28419346	0.86[EUR][1000 genomes]
rs28479931	0.86[EUR][1000 genomes]
rs4869632	0.86[EUR][1000 genomes]
rs57141728	0.86[EUR][1000 genomes]
rs6451260	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6872093	1.00[ASW][hapmap];0.88[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.94[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6892189	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9292621	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv968165	chr5:36182767-36183974	Strong transcription Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36153800-36184400	Strong transcription	HUES64 Cell Line	embryonic stem cell
2	chr5:36154000-36184200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:36154200-36184400	Strong transcription	HUES6 Cell Line	embryonic stem cell
4	chr5:36154200-36184400	Strong transcription	Fetal Thymus	thymus
5	chr5:36154400-36184400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
6	chr5:36154400-36210800	Weak transcription	Small Intestine	intestine
7	chr5:36158200-36183200	Strong transcription	Hela-S3	cervix
8	chr5:36158400-36184400	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:36158600-36184600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr5:36158600-36185600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:36161800-36184400	Strong transcription	Dnd41	blood
12	chr5:36162400-36183000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:36162400-36184400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:36163800-36200600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:36164800-36220800	Weak transcription	Gastric	stomach
16	chr5:36169200-36193200	Weak transcription	Pancreas	Pancrea
17	chr5:36169600-36202400	Weak transcription	Fetal Heart	heart
18	chr5:36171800-36220600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr5:36172000-36185200	Weak transcription	Esophagus	oesophagus
20	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
21	chr5:36172400-36189400	Weak transcription	Fetal Intestine Small	intestine
22	chr5:36172400-36189600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr5:36174200-36195200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr5:36174400-36190800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr5:36175000-36189600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr5:36175000-36191200	Weak transcription	Aorta	Aorta
27	chr5:36175000-36191600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr5:36175200-36184400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr5:36175200-36189600	Weak transcription	Spleen	Spleen
30	chr5:36175200-36202400	Weak transcription	Right Ventricle	heart
31	chr5:36175200-36220800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr5:36175400-36189600	Weak transcription	Lung	lung
33	chr5:36175400-36190600	Weak transcription	Ovary	ovary
34	chr5:36175600-36195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr5:36175600-36222400	Weak transcription	Rectal Smooth Muscle	rectum
36	chr5:36176600-36184400	Strong transcription	HSMM	muscle
37	chr5:36176800-36183200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr5:36176800-36183200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr5:36176800-36184400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr5:36177000-36183200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr5:36177000-36184000	Strong transcription	Placenta	Placenta
42	chr5:36177000-36184400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
43	chr5:36177000-36184400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr5:36177200-36183200	Strong transcription	Fetal Intestine Large	intestine
45	chr5:36177200-36183800	Strong transcription	Fetal Muscle Trunk	muscle
46	chr5:36177200-36184200	Strong transcription	Osteobl	bone
47	chr5:36177200-36184400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr5:36177200-36184400	Strong transcription	Adipose Nuclei	Adipose
49	chr5:36177400-36184000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr5:36177800-36183200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood

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