Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:36272403..36275223-chr5:36277459..36279344,2	K562	blood:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10041692	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10045424	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10053940	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10060125	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10062736	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10068981	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10069006	0.86[EUR][1000 genomes]
rs10076051	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10079910	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10473004	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10473005	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13359244	0.86[EUR][1000 genomes]
rs16902914	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28419346	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28479931	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4869632	1.00[EUR][1000 genomes]
rs6451260	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6872093	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6892189	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9292621	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36261600-36277000	Weak transcription	Pancreas	Pancrea
2	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr5:36269600-36279600	Weak transcription	Brain Angular Gyrus	brain
4	chr5:36269800-36275400	Enhancers	Liver	Liver
5	chr5:36271200-36276800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr5:36272600-36281800	Weak transcription	Brain Substantia Nigra	brain
7	chr5:36273600-36279800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr5:36274000-36275400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:36274400-36275400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:36274600-36275200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr5:36274800-36276800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:36274800-36276800	Weak transcription	Adipose Nuclei	Adipose
13	chr5:36274800-36276800	Weak transcription	Aorta	Aorta
14	chr5:36274800-36282800	Weak transcription	Brain Anterior Caudate	brain
15	chr5:36275000-36276600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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