Variant report

Variant	rs9292621
Chromosome Location	chr5:36228240-36228241
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:36221133..36223749-chr5:36226821..36228522,2	K562	blood:
2	chr5:36220234..36224903-chr5:36227628..36232004,4	K562	blood:
3	chr5:36220506..36223464-chr5:36227618..36229963,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000245711	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10041692	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10045424	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10053940	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10060125	0.86[CHB][hapmap];0.86[EUR][1000 genomes]
rs10062736	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10068981	0.81[ASN][1000 genomes]
rs10069006	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10076051	0.88[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10079910	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10473003	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs10473004	0.88[CHB][hapmap];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10473005	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13359244	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16902914	0.88[CHB][hapmap];0.86[EUR][1000 genomes]
rs28419346	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28479931	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4869632	0.86[EUR][1000 genomes]
rs57141728	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6451260	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6872093	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6892189	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36172000-36229200	Weak transcription	Colonic Mucosa	Colon
2	chr5:36179000-36230000	Weak transcription	Psoas Muscle	Psoas
3	chr5:36191800-36230000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:36196600-36236600	Weak transcription	GM12878-XiMat	blood
5	chr5:36198000-36238400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:36200000-36229600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr5:36200200-36239400	Weak transcription	Fetal Brain Male	brain
8	chr5:36201200-36230200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr5:36201400-36240000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:36213200-36230200	Weak transcription	Brain Germinal Matrix	brain
11	chr5:36213200-36237000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:36215200-36236600	Weak transcription	Small Intestine	intestine
13	chr5:36215800-36237800	Weak transcription	HMEC	breast
14	chr5:36216800-36228400	Weak transcription	HUVEC	blood vessel
15	chr5:36219600-36230000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:36221000-36230200	Weak transcription	K562	blood
17	chr5:36221200-36230000	Weak transcription	HSMMtube	muscle
18	chr5:36221200-36230400	Weak transcription	Lung	lung
19	chr5:36221200-36238800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr5:36221400-36229600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr5:36221600-36230000	Weak transcription	Pancreas	Pancrea
22	chr5:36221600-36230200	Weak transcription	Gastric	stomach
23	chr5:36221600-36232600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr5:36221600-36235600	Weak transcription	Fetal Kidney	kidney
25	chr5:36221600-36236200	Weak transcription	Fetal Intestine Small	intestine
26	chr5:36221600-36238600	Weak transcription	Fetal Stomach	stomach
27	chr5:36221600-36239800	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr5:36223000-36230600	Weak transcription	Brain Hippocampus Middle	brain
29	chr5:36223200-36228600	Weak transcription	NHLF	lung
30	chr5:36223200-36229400	Weak transcription	Fetal Heart	heart
31	chr5:36223400-36228400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr5:36224200-36229800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr5:36225200-36230400	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr5:36225200-36230400	Weak transcription	Brain Substantia Nigra	brain
35	chr5:36225200-36237800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr5:36225400-36228600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr5:36225400-36230400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr5:36225400-36237800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr5:36225400-36237800	Weak transcription	Sigmoid Colon	Sigmoid Colon
40	chr5:36225600-36229400	Weak transcription	Colon Smooth Muscle	Colon
41	chr5:36225600-36229600	Weak transcription	Ovary	ovary
42	chr5:36225600-36230000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr5:36225600-36230400	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr5:36225600-36239800	Weak transcription	Primary hematopoietic stem cells	blood
45	chr5:36225800-36228400	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr5:36225800-36228400	Weak transcription	NHEK	skin
47	chr5:36225800-36230000	Weak transcription	Aorta	Aorta
48	chr5:36225800-36230200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr5:36225800-36230200	Weak transcription	Left Ventricle	heart
50	chr5:36225800-36237800	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links