Variant report

Variant	rs16902914
Chromosome Location	chr5:36277344-36277345
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10041692	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10045424	0.88[CHB][hapmap];0.89[CHD][hapmap];0.86[EUR][1000 genomes]
rs10051833	1.00[YRI][hapmap]
rs10053940	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10060125	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10062736	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10068981	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10069006	0.86[EUR][1000 genomes]
rs10076051	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10079910	0.86[EUR][1000 genomes]
rs10473004	1.00[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10473005	1.00[ASW][hapmap];0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13359244	0.86[CHB][hapmap];0.89[CHD][hapmap];0.86[EUR][1000 genomes]
rs28419346	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28479931	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4869632	1.00[EUR][1000 genomes]
rs57141728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6451260	0.86[EUR][1000 genomes]
rs6872093	0.84[CHD][hapmap];0.86[EUR][1000 genomes]
rs6892189	0.86[EUR][1000 genomes]
rs9292621	0.88[CHB][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830262	chr5:36074311-36293872	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	63 gene(s)	inside rSNPs	diseases
2	nsv1015638	chr5:36203646-36312576	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
3	nsv881598	chr5:36248752-36382802	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:36262800-36283800	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr5:36269600-36279600	Weak transcription	Brain Angular Gyrus	brain
3	chr5:36272600-36281800	Weak transcription	Brain Substantia Nigra	brain
4	chr5:36273600-36279800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr5:36274800-36282800	Weak transcription	Brain Anterior Caudate	brain
6	chr5:36275200-36281600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr5:36276400-36278000	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr5:36276600-36278000	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr5:36276800-36277400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr5:36276800-36277400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr5:36276800-36277400	Enhancers	Psoas Muscle	Psoas
12	chr5:36276800-36277400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr5:36276800-36278000	Enhancers	Aorta	Aorta
14	chr5:36276800-36278800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr5:36276800-36279000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:36276800-36280400	Enhancers	Adipose Nuclei	Adipose
17	chr5:36277000-36277400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:36277000-36277400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr5:36277000-36277400	Enhancers	Right Atrium	heart
20	chr5:36277000-36277400	Enhancers	Right Ventricle	heart
21	chr5:36277000-36277400	Enhancers	NHDF-Ad	bronchial
22	chr5:36277000-36278000	Enhancers	Liver	Liver
23	chr5:36277200-36277400	Enhancers	Pancreas	Pancrea
24	chr5:36277200-36278400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr5:36277200-36279400	Weak transcription	Ovary	ovary
26	chr5:36277200-36282600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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