Variant report

Variant	rs1337258
Chromosome Location	chr13:86243883-86243884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs11617680	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12427778	0.84[AMR][1000 genomes]
rs12427783	0.84[AMR][1000 genomes]
rs12428684	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12429649	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12430426	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12430599	0.82[AMR][1000 genomes]
rs1337259	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538055	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1538058	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1544138	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1544139	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17080097	0.81[AMR][1000 genomes]
rs17080098	0.81[AMR][1000 genomes]
rs17080100	0.81[AMR][1000 genomes]
rs17080101	0.81[AMR][1000 genomes]
rs1753740	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1753742	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1753745	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1753765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1753769	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1753774	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1753776	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1753777	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17648180	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17648227	0.81[AMR][1000 genomes]
rs17648233	0.82[AMR][1000 genomes]
rs17648253	0.82[AMR][1000 genomes]
rs1764941	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1764942	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1764943	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1764950	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1764955	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1764956	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1764957	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1764960	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1764967	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1764973	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1799685	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1928135	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1928137	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2027234	0.82[AMR][1000 genomes]
rs2039656	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2094606	0.81[ASN][1000 genomes]
rs2225232	0.81[ASN][1000 genomes]
rs2343057	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2770531	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2880523	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34620229	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55768080	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs587419	0.81[AMR][1000 genomes]
rs599802	0.81[AMR][1000 genomes]
rs7329796	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs74102085	0.82[AMR][1000 genomes]
rs74102097	0.81[AMR][1000 genomes]
rs7491907	0.82[AMR][1000 genomes]
rs7987119	0.82[ASN][1000 genomes]
rs7987776	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs943920	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9547292	0.81[ASN][1000 genomes]
rs9547317	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9594049	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv471162	chr13:85994700-86296819	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv456051	chr13:85994700-86306452	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv562609	chr13:85994700-86306452	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv428608	chr13:86109178-86262577	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv900733	chr13:86192376-86309366	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86240800-86249400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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