Variant report

Variant	rs599802
Chromosome Location	chr13:86317553-86317554
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs11617680	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11619198	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12427778	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12427783	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12428684	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12429649	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12430426	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12430599	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1337258	0.81[AMR][1000 genomes]
rs1337259	0.85[AMR][1000 genomes]
rs1337274	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1337275	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1337277	0.84[EUR][1000 genomes]
rs1415403	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1538055	0.85[AMR][1000 genomes]
rs1538058	0.85[AMR][1000 genomes]
rs1544138	0.80[AMR][1000 genomes]
rs1544139	0.80[AMR][1000 genomes]
rs17080097	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17080098	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17080100	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17080101	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1752903	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1753740	0.85[AMR][1000 genomes]
rs1753742	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1753745	0.85[AMR][1000 genomes]
rs1753765	0.81[AMR][1000 genomes]
rs1753769	0.83[AMR][1000 genomes]
rs1753774	0.80[AMR][1000 genomes]
rs1753776	0.80[AMR][1000 genomes]
rs1753777	0.80[AMR][1000 genomes]
rs17648180	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17648227	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17648233	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17648253	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1764941	0.85[AMR][1000 genomes]
rs1764942	0.85[AMR][1000 genomes]
rs1764943	0.85[AMR][1000 genomes]
rs1764950	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1764955	0.80[AMR][1000 genomes]
rs1764956	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1764957	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1764960	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1764967	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1764973	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1799685	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2027234	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2039656	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2343057	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2770531	0.85[AMR][1000 genomes]
rs34620229	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55768080	0.85[EUR][1000 genomes]
rs587347	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs587403	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs587419	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs590505	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs603177	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs610472	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs614154	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs622370	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs664674	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs677195	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs680523	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74102085	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74102094	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74102095	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74102097	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7491718	0.97[EUR][1000 genomes]
rs7491907	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9547317	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9594049	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9602814	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9671144	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9671154	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv976270	chr13:86306573-86332392	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86313000-86318200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:86315800-86319800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:86316800-86317800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr13:86316800-86318000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr13:86317200-86317800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr13:86317200-86318000	Enhancers	HUES6 Cell Line	embryonic stem cell

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