Variant report

Variant	rs7491718
Chromosome Location	chr13:86318116-86318117
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11617680	0.82[EUR][1000 genomes]
rs11619198	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12427778	1.00[EUR][1000 genomes]
rs12427783	0.97[EUR][1000 genomes]
rs12428684	0.85[EUR][1000 genomes]
rs12429649	0.85[EUR][1000 genomes]
rs12430426	0.85[EUR][1000 genomes]
rs12430599	0.94[EUR][1000 genomes]
rs12560592	0.96[ASN][1000 genomes]
rs1337274	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1337275	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1337277	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1415403	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17080097	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17080098	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17080100	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17080101	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1752903	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1753742	0.82[EUR][1000 genomes]
rs17648180	0.85[EUR][1000 genomes]
rs17648227	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17648233	0.97[EUR][1000 genomes]
rs17648253	0.95[EUR][1000 genomes]
rs1764956	0.82[EUR][1000 genomes]
rs1764957	0.82[EUR][1000 genomes]
rs1764960	0.82[EUR][1000 genomes]
rs2027234	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2039656	0.85[EUR][1000 genomes]
rs2343057	0.82[EUR][1000 genomes]
rs34620229	0.85[EUR][1000 genomes]
rs55768080	0.82[EUR][1000 genomes]
rs587347	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs587403	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs587419	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs590505	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs599802	0.97[EUR][1000 genomes]
rs603177	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs610472	0.97[EUR][1000 genomes]
rs614154	0.95[EUR][1000 genomes]
rs622370	0.97[EUR][1000 genomes]
rs664674	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs677195	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs680523	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7317294	0.83[ASN][1000 genomes]
rs7317473	0.96[ASN][1000 genomes]
rs74102085	0.97[EUR][1000 genomes]
rs74102094	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74102095	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs74102097	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7491907	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9531838	0.96[ASN][1000 genomes]
rs9547353	0.96[ASN][1000 genomes]
rs9575939	0.93[ASN][1000 genomes]
rs9575940	0.93[ASN][1000 genomes]
rs9594049	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9602814	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9671144	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9671154	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv976270	chr13:86306573-86332392	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3404282	chr13:86317976-86320524	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86313000-86318200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:86315800-86319800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:86317800-86320000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr13:86318000-86319800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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