Variant report

Variant	rs1415403
Chromosome Location	chr13:86299866-86299867
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs11617680	0.82[EUR][1000 genomes]
rs11619198	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12427778	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12427783	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12428684	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12429649	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12430426	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12430599	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12560592	0.86[ASN][1000 genomes]
rs1337259	0.80[AMR][1000 genomes]
rs1337274	0.85[EUR][1000 genomes]
rs1337275	0.85[EUR][1000 genomes]
rs1337277	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1538055	0.80[AMR][1000 genomes]
rs1538058	0.80[AMR][1000 genomes]
rs17080097	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17080098	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17080100	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17080101	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1752903	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1753740	0.80[AMR][1000 genomes]
rs1753742	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1753745	0.80[AMR][1000 genomes]
rs17648180	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17648227	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17648233	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17648253	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1764941	0.80[AMR][1000 genomes]
rs1764942	0.80[AMR][1000 genomes]
rs1764943	0.80[AMR][1000 genomes]
rs1764950	0.80[AMR][1000 genomes]
rs1764956	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1764957	0.82[EUR][1000 genomes]
rs1764960	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2027234	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2039656	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2343057	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2770531	0.80[AMR][1000 genomes]
rs34620229	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs55768080	0.82[EUR][1000 genomes]
rs587347	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587403	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs587419	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs590505	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs599802	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs603177	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs610472	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs614154	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs622370	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs664674	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs677195	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs680523	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7317473	0.86[ASN][1000 genomes]
rs74102085	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs74102094	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74102095	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74102097	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7491718	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7491907	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9531838	0.86[ASN][1000 genomes]
rs9547353	0.86[ASN][1000 genomes]
rs9575939	0.83[ASN][1000 genomes]
rs9575940	0.83[ASN][1000 genomes]
rs9594049	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9602814	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671144	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9671154	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv456051	chr13:85994700-86306452	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv562609	chr13:85994700-86306452	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv900733	chr13:86192376-86309366	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86274000-86313200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86298400-86300000	Enhancers	Fetal Lung	lung
3	chr13:86299000-86300400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr13:86299400-86300800	Enhancers	A549	lung
5	chr13:86299800-86300000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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