Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11619198	0.86[ASN][1000 genomes]
rs1337277	0.92[ASN][1000 genomes]
rs1415403	0.86[ASN][1000 genomes]
rs17080097	0.84[ASN][1000 genomes]
rs17080098	0.84[ASN][1000 genomes]
rs17080100	0.84[ASN][1000 genomes]
rs17080101	0.84[ASN][1000 genomes]
rs1752903	0.82[ASN][1000 genomes]
rs17648227	0.84[ASN][1000 genomes]
rs2027234	0.85[ASN][1000 genomes]
rs587347	0.86[ASN][1000 genomes]
rs587403	0.86[ASN][1000 genomes]
rs587419	0.86[ASN][1000 genomes]
rs590505	0.86[ASN][1000 genomes]
rs603177	0.86[ASN][1000 genomes]
rs664674	0.86[ASN][1000 genomes]
rs677195	0.86[ASN][1000 genomes]
rs680523	0.86[ASN][1000 genomes]
rs7317294	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7317473	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74102094	0.86[ASN][1000 genomes]
rs74102095	0.86[ASN][1000 genomes]
rs74102097	0.86[ASN][1000 genomes]
rs7491718	0.96[ASN][1000 genomes]
rs7491907	0.85[ASN][1000 genomes]
rs9531838	1.00[ASN][1000 genomes]
rs9547353	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9547356	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9547357	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9575939	0.96[ASN][1000 genomes]
rs9575940	0.96[ASN][1000 genomes]
rs9594049	0.84[ASN][1000 genomes]
rs9602814	0.86[ASN][1000 genomes]
rs9671144	0.86[ASN][1000 genomes]
rs9671154	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv976270	chr13:86306573-86332392	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv3404282	chr13:86317976-86320524	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
7	esv3339719	chr13:86318251-86320299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86315800-86319800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr13:86317800-86320000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:86318000-86319800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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