Variant report
| Variant | rs9531838 |
|---|---|
| Chromosome Location | chr13:86320728-86320729 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs11619198 | 0.86[ASN][1000 genomes] |
| rs12560592 | 1.00[ASN][1000 genomes] |
| rs1337277 | 0.84[AFR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1415403 | 0.86[ASN][1000 genomes] |
| rs17080097 | 0.84[ASN][1000 genomes] |
| rs17080098 | 0.84[ASN][1000 genomes] |
| rs17080100 | 0.84[ASN][1000 genomes] |
| rs17080101 | 0.84[ASN][1000 genomes] |
| rs1752903 | 0.82[ASN][1000 genomes] |
| rs17648227 | 0.84[ASN][1000 genomes] |
| rs2027234 | 0.85[ASN][1000 genomes] |
| rs35000071 | 0.81[AFR][1000 genomes] |
| rs587347 | 0.86[ASN][1000 genomes] |
| rs587403 | 0.86[ASN][1000 genomes] |
| rs587419 | 0.86[ASN][1000 genomes] |
| rs590505 | 0.86[ASN][1000 genomes] |
| rs603177 | 0.86[ASN][1000 genomes] |
| rs664674 | 0.86[ASN][1000 genomes] |
| rs677195 | 0.86[ASN][1000 genomes] |
| rs680523 | 0.86[ASN][1000 genomes] |
| rs7317294 | 0.86[ASN][1000 genomes] |
| rs7317473 | 1.00[ASN][1000 genomes] |
| rs7333450 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs74102094 | 0.86[ASN][1000 genomes] |
| rs74102095 | 0.86[ASN][1000 genomes] |
| rs74102097 | 0.86[ASN][1000 genomes] |
| rs7491718 | 0.96[ASN][1000 genomes] |
| rs7491907 | 0.85[ASN][1000 genomes] |
| rs9547353 | 1.00[ASN][1000 genomes] |
| rs9547356 | 0.82[ASN][1000 genomes] |
| rs9575939 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9575940 | 0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9575942 | 0.84[AFR][1000 genomes] |
| rs9594049 | 0.84[ASN][1000 genomes] |
| rs9602814 | 0.86[ASN][1000 genomes] |
| rs9671144 | 0.86[ASN][1000 genomes] |
| rs9671154 | 0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2752724 | chr13:85810499-86320999 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv1037563 | chr13:85830511-86414012 | Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv832668 | chr13:86234885-86364254 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv1044417 | chr13:86239152-86344862 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv976270 | chr13:86306573-86332392 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:86319800-86320800 | Enhancers | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr13:86320000-86320800 | Enhancers | ES-I3 Cell Line | embryonic stem cell |
| 3 | chr13:86320600-86334800 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
