Variant report
| Variant | rs1337412 |
|---|---|
| Chromosome Location | chr6:102151300-102151301 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10485273 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10872739 | 0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1222958 | 0.81[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1222960 | 0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
| rs1337411 | 1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AFR][1000 genomes] |
| rs1337415 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs1415489 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1832293 | 0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2105118 | 0.86[EUR][1000 genomes] |
| rs2225865 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2518294 | 0.87[AMR][1000 genomes] |
| rs2518295 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2518303 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2852560 | 0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9322602 | 0.82[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9485530 | 0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs9485532 | 0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs9498659 | 0.80[AMR][1000 genomes] |
| rs9498663 | 0.82[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9498664 | 0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs9498667 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3384771 | chr6:101996253-102283808 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv463993 | chr6:102084491-102165329 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv604317 | chr6:102084491-102165329 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv981336 | chr6:102149434-102156171 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:102149400-102158000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
| 2 | chr6:102151200-102151600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
