Variant report

Variant	rs2518294
Chromosome Location	chr6:102107607-102107608
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485273	0.82[AMR][1000 genomes]
rs10872739	0.81[AMR][1000 genomes]
rs12197212	0.88[ASN][1000 genomes]
rs1337412	0.87[AMR][1000 genomes]
rs1337415	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1832293	0.83[AMR][1000 genomes]
rs1856133	0.87[ASN][1000 genomes]
rs2105118	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2518295	0.84[AMR][1000 genomes]
rs2518303	0.89[AMR][1000 genomes]
rs2852560	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9485526	0.94[ASN][1000 genomes]
rs9485530	0.84[AMR][1000 genomes]
rs9498658	0.93[ASN][1000 genomes]
rs9498659	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9498662	0.93[ASN][1000 genomes]
rs9498663	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9498664	0.85[AMR][1000 genomes]
rs9498667	0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102095600-102112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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