Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10485273	0.89[EUR][1000 genomes]
rs10872739	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1222958	0.86[CEU][hapmap];0.80[EUR][1000 genomes]
rs1337415	0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1832293	0.86[EUR][1000 genomes]
rs2105118	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2225865	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2518294	0.87[ASN][1000 genomes]
rs2518295	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2852560	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6923409	0.90[CEU][hapmap]
rs9322602	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9485526	0.81[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9485530	0.81[CEU][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9485532	0.84[EUR][1000 genomes]
rs9498658	0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9498659	0.90[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9498662	0.88[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498663	0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9498664	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9498667	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102095600-102112600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:102098600-102105400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:102099200-102103800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:102100200-102104400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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