Variant report
| Variant | rs2225865 |
|---|---|
| Chromosome Location | chr6:102131645-102131646 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10485273 | 0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10872739 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1222958 | 0.86[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs1222960 | 0.90[ASN][1000 genomes] |
| rs1337412 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1337415 | 0.80[ASN][1000 genomes] |
| rs1415489 | 0.84[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1832293 | 0.95[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1856133 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2105118 | 0.85[AMR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2518295 | 0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2518303 | 0.84[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9322602 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9485526 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs9485530 | 0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9485532 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9498658 | 0.84[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9498659 | 0.87[EUR][1000 genomes] |
| rs9498662 | 0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs9498663 | 0.89[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs9498664 | 0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9498667 | 0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv538392 | chr6:101938381-102148360 | Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | esv3384771 | chr6:101996253-102283808 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1032499 | chr6:102069885-102720998 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv463993 | chr6:102084491-102165329 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv604317 | chr6:102084491-102165329 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:102131200-102132000 | Enhancers | HUES64 Cell Line | embryonic stem cell |
