Variant report

Variant	rs2105118
Chromosome Location	chr6:102113988-102113989
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10485273	0.87[CHB][hapmap];0.82[ASN][1000 genomes]
rs10872738	0.86[CHB][hapmap];0.96[MKK][hapmap];0.85[YRI][hapmap]
rs10872739	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12197212	0.86[ASN][1000 genomes]
rs1337412	0.86[EUR][1000 genomes]
rs1337415	0.94[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1337424	0.85[CEU][hapmap];0.82[CHB][hapmap]
rs1415489	0.89[CEU][hapmap];0.87[CHB][hapmap];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1832293	0.86[CHB][hapmap]
rs1856133	0.83[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2065938	0.94[CEU][hapmap];0.87[CHB][hapmap]
rs2225865	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2518294	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2518295	0.84[ASN][1000 genomes]
rs2518303	0.94[CEU][hapmap];0.87[CHB][hapmap];0.85[EUR][1000 genomes]
rs2786251	0.94[CEU][hapmap];0.87[CHB][hapmap]
rs2786254	0.87[CHB][hapmap]
rs2852558	0.84[AFR][1000 genomes]
rs2852559	0.84[AFR][1000 genomes]
rs2852560	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2852565	0.89[CEU][hapmap];0.81[CHB][hapmap]
rs4839800	0.89[CEU][hapmap];0.87[CHB][hapmap]
rs6904687	0.94[CEU][hapmap];0.88[CHB][hapmap];0.88[YRI][hapmap]
rs6923409	0.86[CHB][hapmap]
rs9322602	0.86[CHB][hapmap];0.90[YRI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9322603	0.85[CEU][hapmap];0.86[CHB][hapmap]
rs9485526	1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9485528	0.83[CEU][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs9485530	0.86[CHB][hapmap];0.82[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9485532	0.81[ASN][1000 genomes]
rs9498658	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9498659	0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498662	0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9498663	0.83[CHB][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9498664	0.84[ASN][1000 genomes]
rs9498667	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538392	chr6:101938381-102148360	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv3384771	chr6:101996253-102283808	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv463993	chr6:102084491-102165329	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv604317	chr6:102084491-102165329	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:102113600-102114800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:102113600-102117000	Enhancers	HMEC	breast
3	chr6:102113600-102117600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:102113800-102114200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:102113800-102114200	Enhancers	Gastric	stomach
6	chr6:102113800-102114400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr6:102113800-102114400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr6:102113800-102114400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:102113800-102114600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr6:102113800-102114800	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:102113800-102114800	Enhancers	NH-A	brain

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