Variant report
| Variant | rs13374781 |
|---|---|
| Chromosome Location | chr1:169722099-169722100 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:169720296..169723016-chr1:169734414..169737287,4 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-BLZF1-4 | chr1:169721899-169722469 | expReg_chr1_19271_+ |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10158922 | 1.00[AMR][1000 genomes] |
| rs12025296 | 1.00[EUR][1000 genomes] |
| rs12044536 | 1.00[EUR][1000 genomes] |
| rs12065232 | 1.00[EUR][1000 genomes] |
| rs12066551 | 1.00[EUR][1000 genomes] |
| rs12068701 | 1.00[EUR][1000 genomes] |
| rs12075081 | 1.00[EUR][1000 genomes] |
| rs12077708 | 1.00[EUR][1000 genomes] |
| rs13375701 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2103641 | 1.00[EUR][1000 genomes] |
| rs2272912 | 1.00[EUR][1000 genomes] |
| rs4987370 | 1.00[EUR][1000 genomes] |
| rs56084868 | 1.00[EUR][1000 genomes] |
| rs73041439 | 1.00[EUR][1000 genomes] |
| rs74121797 | 1.00[EUR][1000 genomes] |
| rs74122421 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74122422 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7531947 | 1.00[EUR][1000 genomes] |
| rs989054 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3451367 | chr1:169630075-169976964 | Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 37 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
