Variant report

Variant	rs73041439
Chromosome Location	chr1:169709758-169709759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12025296	1.00[EUR][1000 genomes]
rs12044536	1.00[EUR][1000 genomes]
rs12065232	1.00[EUR][1000 genomes]
rs12066551	1.00[EUR][1000 genomes]
rs12068701	1.00[EUR][1000 genomes]
rs12075081	1.00[EUR][1000 genomes]
rs12077708	1.00[EUR][1000 genomes]
rs13374781	1.00[EUR][1000 genomes]
rs13375701	1.00[EUR][1000 genomes]
rs2103641	1.00[EUR][1000 genomes]
rs2272912	1.00[EUR][1000 genomes]
rs4987370	1.00[EUR][1000 genomes]
rs56084868	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74121797	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74122421	1.00[EUR][1000 genomes]
rs74122422	1.00[EUR][1000 genomes]
rs7531947	1.00[EUR][1000 genomes]
rs989054	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169706400-169710200	Weak transcription	Liver	Liver
2	chr1:169707000-169710200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:169707000-169710200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:169707000-169710400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr1:169707200-169710400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr1:169707400-169710400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:169707400-169710600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr1:169707800-169710400	Enhancers	HUVEC	blood vessel
9	chr1:169708800-169713800	Weak transcription	Left Ventricle	heart
10	chr1:169709400-169711600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr1:169709600-169710600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:169709600-169710600	Weak transcription	Aorta	Aorta
13	chr1:169709600-169710600	Enhancers	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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