Variant report

Variant	rs74121797
Chromosome Location	chr1:169714253-169714254
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12025296	1.00[EUR][1000 genomes]
rs12044536	1.00[EUR][1000 genomes]
rs12065232	1.00[EUR][1000 genomes]
rs12066551	1.00[EUR][1000 genomes]
rs12068701	1.00[EUR][1000 genomes]
rs12075081	1.00[EUR][1000 genomes]
rs12077708	1.00[EUR][1000 genomes]
rs13374781	1.00[EUR][1000 genomes]
rs13375701	1.00[EUR][1000 genomes]
rs2103641	1.00[EUR][1000 genomes]
rs2272912	1.00[EUR][1000 genomes]
rs4987370	1.00[EUR][1000 genomes]
rs56084868	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041439	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74122421	1.00[EUR][1000 genomes]
rs74122422	1.00[EUR][1000 genomes]
rs7531947	1.00[EUR][1000 genomes]
rs989054	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169711000-169714600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr1:169711200-169714600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:169711200-169714600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr1:169711400-169714400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr1:169713800-169714400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:169713800-169714400	Enhancers	Liver	Liver
7	chr1:169713800-169714400	Enhancers	Left Ventricle	heart
8	chr1:169713800-169715200	Enhancers	HUVEC	blood vessel
9	chr1:169714000-169714600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:169714200-169714400	Flanking Active TSS	NH-A	brain
11	chr1:169714200-169715000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr1:169714200-169715200	Flanking Active TSS	HepG2	liver
13	chr1:169714200-169715600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr1:169714200-169715800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:169714200-169715800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:169714200-169715800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:169714200-169715800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr1:169714200-169716200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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