Variant report

Variant	rs13375701
Chromosome Location	chr1:169761758-169761759
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZC3H11A	chr1:169761636-169761791	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr1:169732129..169734775-chr1:169760977..169762704,2	K562	blood:
2	chr1:169737043..169739732-chr1:169761259..169763805,3	MCF-7	breast:
3	chr1:169738855..169740454-chr1:169761742..169763292,2	K562	blood:

Variant related genes	Relation type
C1orf112	TF binding region
ENSG00000230704	Chromatin interaction
ENSG00000007908	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10158922	1.00[AMR][1000 genomes]
rs10919276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12025296	1.00[EUR][1000 genomes]
rs12044536	1.00[EUR][1000 genomes]
rs12065232	1.00[EUR][1000 genomes]
rs12066551	1.00[EUR][1000 genomes]
rs12068701	1.00[EUR][1000 genomes]
rs12071325	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075081	1.00[EUR][1000 genomes]
rs12077708	1.00[EUR][1000 genomes]
rs12079608	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12095784	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13374781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16862886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2103641	1.00[EUR][1000 genomes]
rs2272912	1.00[EUR][1000 genomes]
rs4987370	1.00[EUR][1000 genomes]
rs56084868	1.00[EUR][1000 genomes]
rs57038529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73041439	1.00[EUR][1000 genomes]
rs74121797	1.00[EUR][1000 genomes]
rs74122421	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74122452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7531947	1.00[EUR][1000 genomes]
rs989054	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169750800-169762800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:169751600-169762600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:169753600-169763000	Weak transcription	HMEC	breast
4	chr1:169756400-169762400	Weak transcription	Fetal Brain Male	brain
5	chr1:169756600-169762600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr1:169757000-169762400	Weak transcription	Fetal Thymus	thymus
7	chr1:169757400-169763000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr1:169757400-169763000	Weak transcription	Thymus	Thymus
9	chr1:169757400-169763200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr1:169757600-169762200	Weak transcription	Fetal Intestine Small	intestine
11	chr1:169757600-169763000	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr1:169758000-169762800	Weak transcription	Primary B cells from cord blood	blood
13	chr1:169758200-169763200	Weak transcription	Adipose Nuclei	Adipose
14	chr1:169758200-169763200	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr1:169758600-169763000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:169758600-169763200	Weak transcription	Brain Hippocampus Middle	brain
17	chr1:169758600-169763200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:169758600-169763400	Weak transcription	Gastric	stomach
19	chr1:169758800-169762200	Weak transcription	Aorta	Aorta
20	chr1:169758800-169762400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:169758800-169763000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:169758800-169763000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:169758800-169763200	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:169758800-169763200	Weak transcription	HSMM	muscle
25	chr1:169758800-169763600	Weak transcription	Spleen	Spleen
26	chr1:169759000-169762600	Weak transcription	Brain Germinal Matrix	brain
27	chr1:169759000-169762800	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:169759000-169763000	Weak transcription	Duodenum Mucosa	Duodenum
29	chr1:169759000-169763000	Weak transcription	A549	lung
30	chr1:169759200-169763000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr1:169759200-169763200	Weak transcription	Ovary	ovary
32	chr1:169759200-169763200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr1:169759400-169762600	Weak transcription	Brain Anterior Caudate	brain
34	chr1:169759400-169763000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr1:169759600-169763000	Weak transcription	Brain Substantia Nigra	brain
36	chr1:169759600-169763200	Weak transcription	Pancreas	Pancrea
37	chr1:169759800-169763200	Weak transcription	Fetal Intestine Large	intestine
38	chr1:169759800-169763200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr1:169760000-169763000	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:169760200-169763000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr1:169760400-169761800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr1:169760400-169762000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr1:169760400-169762600	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr1:169760400-169763000	Weak transcription	Fetal Stomach	stomach
45	chr1:169760400-169763200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr1:169760400-169763200	Weak transcription	Brain Cingulate Gyrus	brain
47	chr1:169760400-169763200	Weak transcription	Lung	lung
48	chr1:169760400-169763200	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr1:169760400-169763200	Weak transcription	Psoas Muscle	Psoas
50	chr1:169760400-169763200	Weak transcription	NH-A	brain

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