Variant report

Variant	rs13378130
Chromosome Location	chr13:55008368-55008369
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10047802	0.81[EUR][1000 genomes]
rs34883109	0.81[EUR][1000 genomes]
rs61954782	0.82[EUR][1000 genomes]
rs61954783	0.81[EUR][1000 genomes]
rs6561776	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7322728	0.83[EUR][1000 genomes]
rs8001623	0.81[EUR][1000 genomes]
rs9316714	0.89[ASN][1000 genomes]
rs9591590	0.86[EUR][1000 genomes]
rs9591591	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9596954	0.85[EUR][1000 genomes]
rs9596955	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2763025	chr13:55004448-55023333	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:55008200-55008400	Enhancers	Pancreatic Islets	Pancreatic Islet

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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