Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs13378130	0.81[EUR][1000 genomes]
rs28510486	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34883109	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35451065	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61954782	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61954783	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61954784	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6561776	0.85[ASN][1000 genomes]
rs73201621	0.96[ASN][1000 genomes]
rs73201626	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7322728	0.88[ASN][1000 genomes]
rs7335700	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8001623	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9316714	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9591590	0.90[ASN][1000 genomes]
rs9591591	0.85[ASN][1000 genomes]
rs9596952	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596953	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9596954	0.87[ASN][1000 genomes]
rs9596955	0.90[ASN][1000 genomes]
rs9805180	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54961200-54962600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
2	chr13:54961400-54962400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
3	chr13:54961600-54962200	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
4	chr13:54961600-54962400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
5	chr13:54961600-54963800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
6	chr13:54961800-54963400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr13:54962000-54962400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr13:54962000-54962400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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