Variant report

Variant	rs73201621
Chromosome Location	chr13:54965123-54965124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10047802	0.96[ASN][1000 genomes]
rs28510486	1.00[ASN][1000 genomes]
rs34883109	0.96[ASN][1000 genomes]
rs35451065	1.00[ASN][1000 genomes]
rs61954782	0.96[ASN][1000 genomes]
rs61954783	0.96[ASN][1000 genomes]
rs61954784	1.00[ASN][1000 genomes]
rs6561776	0.88[ASN][1000 genomes]
rs73201626	1.00[ASN][1000 genomes]
rs7322728	0.92[ASN][1000 genomes]
rs7335700	1.00[ASN][1000 genomes]
rs8001623	0.96[ASN][1000 genomes]
rs9591590	0.94[ASN][1000 genomes]
rs9591591	0.88[ASN][1000 genomes]
rs9596952	0.96[ASN][1000 genomes]
rs9596953	1.00[ASN][1000 genomes]
rs9596954	0.91[ASN][1000 genomes]
rs9596955	0.94[ASN][1000 genomes]
rs9805180	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54963800-54966200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr13:54965000-54966000	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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