Variant report
| Variant | rs9591590 |
|---|---|
| Chromosome Location | chr13:54995769-54995770 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10047802 | 0.90[ASN][1000 genomes] |
| rs13378130 | 0.86[EUR][1000 genomes] |
| rs28510486 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs34883109 | 0.90[ASN][1000 genomes] |
| rs35451065 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs61954782 | 0.90[ASN][1000 genomes] |
| rs61954783 | 0.90[ASN][1000 genomes] |
| rs61954784 | 0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs6561776 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs73201621 | 0.94[ASN][1000 genomes] |
| rs73201626 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs7322728 | 0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7335700 | 0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs8001623 | 0.90[ASN][1000 genomes] |
| rs9591591 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9596952 | 0.90[ASN][1000 genomes] |
| rs9596953 | 0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs9596954 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9596955 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9805180 | 0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1051063 | chr13:54777487-54997866 | Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv541778 | chr13:54777487-54997866 | Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | esv3349795 | chr13:54892694-55252030 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:54993800-54998600 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
