Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10047802	0.90[ASN][1000 genomes]
rs13378130	0.86[EUR][1000 genomes]
rs28510486	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34883109	0.90[ASN][1000 genomes]
rs35451065	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61954782	0.90[ASN][1000 genomes]
rs61954783	0.90[ASN][1000 genomes]
rs61954784	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6561776	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73201621	0.94[ASN][1000 genomes]
rs73201626	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7322728	0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7335700	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8001623	0.90[ASN][1000 genomes]
rs9591590	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591591	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9591592	0.87[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs9596952	0.90[ASN][1000 genomes]
rs9596953	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9596954	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9805180	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54993800-54998600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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