Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10047802	0.85[ASN][1000 genomes]
rs13378130	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs28510486	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34883109	0.85[ASN][1000 genomes]
rs35451065	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61954782	0.85[ASN][1000 genomes]
rs61954783	0.85[ASN][1000 genomes]
rs61954784	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6561776	1.00[ASW][hapmap];0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73201621	0.88[ASN][1000 genomes]
rs73201626	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7322728	0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7335700	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8001623	0.85[ASN][1000 genomes]
rs9591590	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9591591	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9596952	0.85[ASN][1000 genomes]
rs9596953	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9596954	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9596955	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9805180	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2763025	chr13:55004448-55023333	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
3	nsv977246	chr13:55013586-55019919	Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9591592	LECT1	cis	parietal	SCAN
rs9591592	KPNA3	cis	parietal	SCAN
rs9591592	LECT1	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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