Variant report

Variant	rs13389513
Chromosome Location	chr2:181883887-181883888
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:181876866..181879507-chr2:181882393..181884603,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10167039	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10180373	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10180999	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10190282	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203057	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10203106	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10206321	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13396254	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399193	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13406482	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13409312	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13420526	0.81[AFR][1000 genomes]
rs13420661	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13425162	0.90[ASN][1000 genomes]
rs13425730	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs28887797	1.00[ASN][1000 genomes]
rs4077214	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4618006	0.94[ASN][1000 genomes]
rs4618007	0.94[ASN][1000 genomes]
rs6706552	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6721173	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6722001	0.90[ASN][1000 genomes]
rs6761219	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181856800-181897200	Weak transcription	Primary B cells from cord blood	blood
2	chr2:181857800-181901200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr2:181860000-181894800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr2:181871000-181886600	Weak transcription	Brain Hippocampus Middle	brain
5	chr2:181873200-181885000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr2:181873400-181901000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:181873600-181887800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr2:181873600-181889600	Weak transcription	Colon Smooth Muscle	Colon
9	chr2:181876200-181885000	Weak transcription	Brain Angular Gyrus	brain
10	chr2:181882200-181885000	Weak transcription	Psoas Muscle	Psoas
11	chr2:181882400-181884800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr2:181883400-181886800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr2:181883600-181884000	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links