Variant report

Variant	rs13390231
Chromosome Location	chr2:179036192-179036193
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179031170..179033889-chr2:179035813..179038780,2	K562	blood:
2	chr2:179034919..179036538-chr2:179039354..179041839,2	K562	blood:
3	chr2:179034919..179037677-chr2:179039354..179042272,3	K562	blood:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs101266	0.81[JPT][hapmap]
rs10173229	0.89[ASN][1000 genomes]
rs10197166	0.83[JPT][hapmap]
rs10930823	0.94[AFR][1000 genomes]
rs10930824	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10930826	0.87[ASN][1000 genomes]
rs10930827	0.82[CHB][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs11883528	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11886090	0.86[ASN][1000 genomes]
rs12185670	0.88[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.95[ASN][1000 genomes]
rs12476671	0.81[JPT][hapmap]
rs12620314	0.93[ASN][1000 genomes]
rs12623701	0.94[ASN][1000 genomes]
rs13001608	0.89[ASN][1000 genomes]
rs13004218	0.95[ASN][1000 genomes]
rs13004565	0.86[ASN][1000 genomes]
rs13007977	0.93[ASN][1000 genomes]
rs13013858	0.95[AFR][1000 genomes]
rs13403689	0.81[JPT][hapmap]
rs1374257	0.91[ASN][1000 genomes]
rs147180	0.81[JPT][hapmap]
rs1900251	0.90[ASN][1000 genomes]
rs2116544	0.95[ASN][1000 genomes]
rs2366157	0.87[JPT][hapmap]
rs333997	0.83[JPT][hapmap]
rs334002	0.81[JPT][hapmap]
rs334013	0.82[JPT][hapmap]
rs334014	0.81[JPT][hapmap]
rs334024	0.83[CHB][hapmap];0.88[JPT][hapmap]
rs334028	0.81[CHB][hapmap];0.88[JPT][hapmap]
rs334035	0.83[JPT][hapmap]
rs334037	0.88[JPT][hapmap]
rs334041	0.81[JPT][hapmap]
rs334043	0.83[JPT][hapmap]
rs334044	0.81[JPT][hapmap]
rs334048	0.80[ASN][1000 genomes]
rs334051	0.91[ASN][1000 genomes]
rs334102	0.81[JPT][hapmap]
rs334103	0.81[JPT][hapmap]
rs334110	0.81[JPT][hapmap]
rs34238455	0.95[ASN][1000 genomes]
rs34477946	0.95[ASN][1000 genomes]
rs35480930	0.95[AFR][1000 genomes]
rs35776135	0.95[ASN][1000 genomes]
rs4638831	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4893848	0.87[ASN][1000 genomes]
rs4893999	0.94[ASN][1000 genomes]
rs4894000	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs551368	0.81[JPT][hapmap]
rs62176039	0.91[ASN][1000 genomes]
rs6719178	0.87[JPT][hapmap]
rs7419749	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs7581504	0.81[JPT][hapmap]
rs7583174	0.87[ASN][1000 genomes]
rs7589907	0.98[AFR][1000 genomes]
rs7596504	0.87[ASN][1000 genomes]
rs9989738	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv875453	chr2:179022751-179060313	Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv875454	chr2:179022751-179066443	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179032000-179038600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links