Variant report

Variant	rs1374257
Chromosome Location	chr2:179017303-179017304
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs101266	0.88[JPT][hapmap]
rs10173229	0.87[ASN][1000 genomes]
rs10197166	0.82[JPT][hapmap]
rs10930824	0.91[ASN][1000 genomes]
rs10930826	0.85[ASN][1000 genomes]
rs10930827	0.95[CHB][hapmap];0.97[CHD][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs11883528	0.93[ASN][1000 genomes]
rs11886090	0.84[ASN][1000 genomes]
rs12185670	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12620314	0.95[ASN][1000 genomes]
rs12623701	0.91[ASN][1000 genomes]
rs13001608	0.87[ASN][1000 genomes]
rs13004218	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs13004565	0.84[ASN][1000 genomes]
rs13007977	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13390231	0.91[ASN][1000 genomes]
rs147180	0.88[JPT][hapmap]
rs186736	0.82[JPT][hapmap]
rs1900251	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2116544	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2366157	0.82[JPT][hapmap]
rs333992	0.81[JPT][hapmap]
rs333993	0.81[JPT][hapmap]
rs333997	0.88[JPT][hapmap]
rs334024	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs334028	0.95[CHB][hapmap];0.93[JPT][hapmap]
rs334035	0.82[JPT][hapmap]
rs334037	0.90[CHB][hapmap];0.94[JPT][hapmap]
rs334048	0.89[ASN][1000 genomes]
rs334051	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34238455	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34477946	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs35776135	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4638831	0.91[ASN][1000 genomes]
rs4893848	0.85[ASN][1000 genomes]
rs4893999	0.97[ASN][1000 genomes]
rs4894000	0.91[ASN][1000 genomes]
rs551368	0.88[JPT][hapmap]
rs62176039	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6719178	0.82[JPT][hapmap]
rs7419749	0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7583174	0.84[ASN][1000 genomes]
rs7596504	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179016200-179019200	Enhancers	Fetal Intestine Large	intestine
2	chr2:179016400-179018600	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr2:179016800-179017400	Enhancers	Adipose Nuclei	Adipose
4	chr2:179016800-179017600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:179016800-179017600	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr2:179016800-179018200	Enhancers	HepG2	liver
7	chr2:179016800-179018600	Enhancers	Duodenum Mucosa	Duodenum
8	chr2:179016800-179019400	Enhancers	Fetal Intestine Small	intestine
9	chr2:179017000-179017400	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr2:179017000-179018400	Enhancers	Fetal Lung	lung
11	chr2:179017000-179018400	Weak transcription	Gastric	stomach
12	chr2:179017200-179017400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr2:179017200-179017400	Enhancers	Liver	Liver
14	chr2:179017200-179018000	Enhancers	Pancreatic Islets	Pancreatic Islet

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