Variant report
| Variant | rs13394211 |
|---|---|
| Chromosome Location | chr2:86569596-86569597 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr2:86558503..86561277-chr2:86568134..86571104,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| REEP1 | TF binding region |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10179968 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10192729 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10496321 | 1.00[AMR][1000 genomes] |
| rs13427212 | 1.00[AMR][1000 genomes] |
| rs1607448 | 1.00[AMR][1000 genomes] |
| rs17027161 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs55645731 | 1.00[AMR][1000 genomes] |
| rs56301854 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs58382371 | 1.00[AMR][1000 genomes] |
| rs59520922 | 1.00[AMR][1000 genomes] |
| rs60391171 | 1.00[AMR][1000 genomes] |
| rs6721311 | 0.83[AMR][1000 genomes] |
| rs73945284 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73945285 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73945286 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73945298 | 1.00[AMR][1000 genomes] |
| rs73945300 | 1.00[AMR][1000 genomes] |
| rs73946205 | 1.00[AMR][1000 genomes] |
| rs73946210 | 1.00[AMR][1000 genomes] |
| rs73946213 | 1.00[AMR][1000 genomes] |
| rs73946224 | 1.00[AMR][1000 genomes] |
| rs73949508 | 1.00[AMR][1000 genomes] |
| rs7600275 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7609052 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3412938 | chr2:86370969-86867936 | Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 77 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
