Variant report
Variant | rs73945285 |
---|---|
Chromosome Location | chr2:86575613-86575614 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10179968 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10192729 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs10496321 | 1.00[AMR][1000 genomes] |
rs13394211 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs13427212 | 1.00[AMR][1000 genomes] |
rs1607448 | 1.00[AMR][1000 genomes] |
rs17027161 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs55645731 | 1.00[AMR][1000 genomes] |
rs56301854 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs58382371 | 1.00[AMR][1000 genomes] |
rs59520922 | 1.00[AMR][1000 genomes] |
rs60391171 | 1.00[AMR][1000 genomes] |
rs6721311 | 0.83[AMR][1000 genomes] |
rs73945284 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73945286 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs73945298 | 1.00[AMR][1000 genomes] |
rs73945300 | 1.00[AMR][1000 genomes] |
rs73946205 | 1.00[AMR][1000 genomes] |
rs73946210 | 1.00[AMR][1000 genomes] |
rs73946213 | 1.00[AMR][1000 genomes] |
rs73946224 | 1.00[AMR][1000 genomes] |
rs73949508 | 1.00[AMR][1000 genomes] |
rs7600275 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rs7609052 | 0.83[AMR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv3412938 | chr2:86370969-86867936 | Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 77 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:86574600-86579200 | Weak transcription | Fetal Intestine Large | intestine |