Variant report

Variant	rs73945298
Chromosome Location	chr2:86654653-86654654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10179968	1.00[AMR][1000 genomes]
rs10192729	1.00[AMR][1000 genomes]
rs10496321	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13394211	1.00[AMR][1000 genomes]
rs13427212	1.00[AMR][1000 genomes]
rs1607448	1.00[AMR][1000 genomes]
rs17027161	1.00[AMR][1000 genomes]
rs55645731	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56301854	1.00[AMR][1000 genomes]
rs58382371	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59520922	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60391171	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6721311	0.83[AMR][1000 genomes]
rs73945284	1.00[AMR][1000 genomes]
rs73945285	1.00[AMR][1000 genomes]
rs73945286	1.00[AMR][1000 genomes]
rs73945300	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73946205	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73946210	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73946213	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73946224	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73947226	1.00[AMR][1000 genomes]
rs73949508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73949836	1.00[AMR][1000 genomes]
rs73949841	1.00[AMR][1000 genomes]
rs73949843	0.83[AMR][1000 genomes]
rs7600275	1.00[AMR][1000 genomes]
rs7609052	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	nsv532724	chr2:86622295-87086407	Weak transcription Active TSS Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86653200-86655000	Enhancers	Fetal Intestine Small	intestine
2	chr2:86653200-86655200	Enhancers	Fetal Intestine Large	intestine
3	chr2:86654000-86664400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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