Variant report

Variant	rs7600275
Chromosome Location	chr2:86594950-86594951
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:86525475..86526402-chr2:86594830..86595950,4	MCF-7	breast:
2	chr2:86448891..86450074-chr2:86594892..86595864,3	MCF-7	breast:
3	chr2:86446503..86449677-chr2:86593387..86596210,3	MCF-7	breast:
4	chr2:86593659..86595230-chr2:86598158..86600807,2	K562	blood:
5	chr2:86594067..86596122-chr2:86600316..86602892,2	MCF-7	breast:
6	chr2:86593659..86596612-chr2:86598158..86600807,3	K562	blood:
7	chr2:86588403..86590513-chr2:86593464..86596116,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10179968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10192729	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10496321	1.00[AMR][1000 genomes]
rs13394211	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13427212	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1607448	1.00[AMR][1000 genomes]
rs17027161	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55645731	1.00[AMR][1000 genomes]
rs56301854	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58382371	1.00[AMR][1000 genomes]
rs59520922	1.00[AMR][1000 genomes]
rs60391171	1.00[AMR][1000 genomes]
rs6721311	0.83[AMR][1000 genomes]
rs73945284	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73945285	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73945286	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73945298	1.00[AMR][1000 genomes]
rs73945300	1.00[AMR][1000 genomes]
rs73946205	1.00[AMR][1000 genomes]
rs73946210	1.00[AMR][1000 genomes]
rs73946213	1.00[AMR][1000 genomes]
rs73946224	1.00[AMR][1000 genomes]
rs73949508	1.00[AMR][1000 genomes]
rs73949836	1.00[AMR][1000 genomes]
rs73949841	1.00[AMR][1000 genomes]
rs7609052	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86588400-86595200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr2:86593000-86596000	Enhancers	Fetal Intestine Small	intestine
3	chr2:86593400-86595400	Enhancers	Duodenum Mucosa	Duodenum
4	chr2:86593400-86596000	Enhancers	Fetal Intestine Large	intestine
5	chr2:86593400-86596000	Enhancers	Pancreas	Pancrea
6	chr2:86594000-86595200	Enhancers	Liver	Liver
7	chr2:86594000-86596000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr2:86594000-86596000	Enhancers	Right Ventricle	heart
9	chr2:86594200-86595400	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr2:86594200-86595400	Enhancers	HepG2	liver
11	chr2:86594200-86595600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr2:86594200-86596000	Enhancers	Primary hematopoietic stem cells	blood
13	chr2:86594200-86596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr2:86594200-86596000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr2:86594400-86596200	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr2:86594600-86595000	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr2:86594600-86595400	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr2:86594600-86596000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr2:86594800-86595000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr2:86594800-86595200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr2:86594800-86595200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr2:86594800-86595200	Enhancers	Hela-S3	cervix
23	chr2:86594800-86595400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr2:86594800-86595600	Enhancers	Primary T helper naive cells from peripheral blood	blood
25	chr2:86594800-86595600	Enhancers	Primary T helper cells PMA-I stimulated	--
26	chr2:86594800-86596000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
27	chr2:86594800-86596000	Enhancers	Stomach Mucosa	stomach

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