Variant report

Variant	rs1339805
Chromosome Location	chr10:26192926-26192927
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10741105	0.84[EUR][1000 genomes]
rs10764595	0.87[EUR][1000 genomes]
rs10828907	0.80[ASN][1000 genomes]
rs10828915	0.88[EUR][1000 genomes]
rs10828922	0.87[EUR][1000 genomes]
rs10828940	0.84[EUR][1000 genomes]
rs10828942	0.84[EUR][1000 genomes]
rs10828943	0.82[EUR][1000 genomes]
rs11014850	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11014937	0.82[EUR][1000 genomes]
rs12241971	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12570908	0.81[ASN][1000 genomes]
rs12779127	0.81[EUR][1000 genomes]
rs1339804	0.80[ASN][1000 genomes]
rs1339817	0.84[EUR][1000 genomes]
rs1416859	0.82[EUR][1000 genomes]
rs1538645	0.82[ASN][1000 genomes]
rs1578216	0.85[EUR][1000 genomes]
rs1578217	0.84[EUR][1000 genomes]
rs1915477	0.84[EUR][1000 genomes]
rs1976828	0.83[EUR][1000 genomes]
rs2368116	0.81[ASN][1000 genomes]
rs2368117	0.84[EUR][1000 genomes]
rs3824699	0.81[EUR][1000 genomes]
rs4328138	0.80[ASN][1000 genomes]
rs4503431	0.80[ASN][1000 genomes]
rs4747545	0.82[EUR][1000 genomes]
rs4749084	0.86[EUR][1000 genomes]
rs6482523	0.87[EUR][1000 genomes]
rs7071420	0.80[ASN][1000 genomes]
rs7074489	0.89[EUR][1000 genomes]
rs7100527	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7896398	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7904360	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7908158	0.81[ASN][1000 genomes]
rs7920650	0.81[ASN][1000 genomes]
rs7923691	0.88[EUR][1000 genomes]
rs9299814	0.85[ASN][1000 genomes]
rs9663248	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9665611	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26188600-26197000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr10:26189000-26193200	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr10:26189600-26193800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr10:26190600-26196400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr10:26190800-26196200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:26191400-26193800	Enhancers	Primary B cells from cord blood	blood
7	chr10:26191600-26194400	Enhancers	Primary B cells from peripheral blood	blood
8	chr10:26192600-26197400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:26192800-26196000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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