Variant report

Variant	rs10828942
Chromosome Location	chr10:26333063-26333064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 110 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:109)

rs_ID	r²[population]
rs1033308	0.87[ASN][1000 genomes]
rs10741103	0.82[ASN][1000 genomes]
rs10741105	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10764590	0.84[ASN][1000 genomes]
rs10764591	0.84[ASN][1000 genomes]
rs10764594	0.83[ASN][1000 genomes]
rs10764595	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10764597	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10828907	0.83[ASN][1000 genomes]
rs10828912	0.83[ASN][1000 genomes]
rs10828913	0.82[ASN][1000 genomes]
rs10828915	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10828916	0.86[ASN][1000 genomes]
rs10828917	0.86[ASN][1000 genomes]
rs10828922	0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828927	0.88[ASN][1000 genomes]
rs10828928	0.88[ASN][1000 genomes]
rs10828940	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10828943	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10828947	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10828948	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10828952	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11014850	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11014851	0.83[ASN][1000 genomes]
rs11014863	0.81[ASN][1000 genomes]
rs11014913	0.91[ASN][1000 genomes]
rs11014937	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12218737	0.87[EUR][1000 genomes]
rs12241971	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12268184	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12413095	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12414462	0.82[EUR][1000 genomes]
rs12415729	0.82[EUR][1000 genomes]
rs12570908	0.85[ASN][1000 genomes]
rs12570917	0.83[ASN][1000 genomes]
rs12573080	0.88[EUR][1000 genomes]
rs12777444	0.86[ASN][1000 genomes]
rs12779127	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1339804	0.84[ASN][1000 genomes]
rs1339805	0.84[EUR][1000 genomes]
rs1339817	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1416855	0.88[ASN][1000 genomes]
rs1416859	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1416862	0.88[ASN][1000 genomes]
rs1474216	0.85[ASN][1000 genomes]
rs1538645	0.86[ASN][1000 genomes]
rs1578216	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1578217	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1851146	0.90[ASN][1000 genomes]
rs1891382	0.87[EUR][1000 genomes]
rs1915477	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1976828	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2027356	0.89[ASN][1000 genomes]
rs2096175	0.82[EUR][1000 genomes]
rs2105344	0.82[EUR][1000 genomes]
rs2153345	0.85[ASN][1000 genomes]
rs2153826	0.82[EUR][1000 genomes]
rs2204023	0.90[ASN][1000 genomes]
rs2368116	0.82[ASN][1000 genomes]
rs2368117	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2368118	0.86[ASN][1000 genomes]
rs2368121	0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2947353	0.82[ASN][1000 genomes]
rs3737275	0.89[ASN][1000 genomes]
rs3758450	0.83[ASN][1000 genomes]
rs3817420	0.85[ASN][1000 genomes]
rs3818956	0.82[EUR][1000 genomes]
rs3824699	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4328138	0.83[ASN][1000 genomes]
rs4403709	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4503431	0.83[ASN][1000 genomes]
rs4747545	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4749083	0.82[ASN][1000 genomes]
rs4749084	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6482520	0.85[ASN][1000 genomes]
rs6482523	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6482524	0.87[ASN][1000 genomes]
rs7068085	0.84[ASN][1000 genomes]
rs7069921	0.83[ASN][1000 genomes]
rs7071420	0.83[ASN][1000 genomes]
rs7071526	0.83[ASN][1000 genomes]
rs7073804	0.83[ASN][1000 genomes]
rs7074489	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7077072	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7084310	0.83[ASN][1000 genomes]
rs7084614	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7100134	0.91[ASN][1000 genomes]
rs7100527	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7896398	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7904196	0.87[EUR][1000 genomes]
rs7904360	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7905199	0.90[ASN][1000 genomes]
rs7908158	0.86[ASN][1000 genomes]
rs7908742	0.88[ASN][1000 genomes]
rs7910068	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7914361	0.90[ASN][1000 genomes]
rs7914935	0.88[ASN][1000 genomes]
rs7918880	0.83[ASN][1000 genomes]
rs7920650	0.82[ASN][1000 genomes]
rs7921616	0.84[EUR][1000 genomes]
rs7923264	0.88[ASN][1000 genomes]
rs7923691	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8181447	0.84[ASN][1000 genomes]
rs9663248	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9664363	0.86[ASN][1000 genomes]
rs9665611	0.82[ASN][1000 genomes]
rs9731571	0.82[ASN][1000 genomes]
rs993397	0.90[ASN][1000 genomes]
rs993398	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792417	chr10:26263695-26395038	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26327600-26336800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr10:26332200-26333400	Enhancers	Aorta	Aorta
3	chr10:26332200-26333800	Enhancers	Brain Germinal Matrix	brain
4	chr10:26332400-26333200	Enhancers	Fetal Stomach	stomach
5	chr10:26332600-26333400	Enhancers	Fetal Muscle Trunk	muscle
6	chr10:26332600-26333800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr10:26332600-26335200	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr10:26332800-26333400	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr10:26332800-26333400	Enhancers	Fetal Brain Male	brain
10	chr10:26332800-26333400	Enhancers	Fetal Lung	lung
11	chr10:26332800-26333600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:26333000-26334200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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