Variant report

Variant	rs1416855
Chromosome Location	chr10:26252500-26252501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 107 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10741103	0.90[ASN][1000 genomes]
rs10741105	0.92[ASN][1000 genomes]
rs10764588	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10764589	0.86[ASN][1000 genomes]
rs10764590	0.90[ASN][1000 genomes]
rs10764591	0.90[ASN][1000 genomes]
rs10764594	0.93[ASN][1000 genomes]
rs10764595	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs10764597	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10828897	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10828907	0.90[ASN][1000 genomes]
rs10828912	0.93[ASN][1000 genomes]
rs10828913	0.93[ASN][1000 genomes]
rs10828915	0.96[ASN][1000 genomes]
rs10828916	0.98[ASN][1000 genomes]
rs10828917	0.95[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10828922	0.98[ASN][1000 genomes]
rs10828927	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10828928	0.87[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs10828940	0.95[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs10828942	0.88[ASN][1000 genomes]
rs10828943	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828947	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs10828948	0.90[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs11014850	0.93[ASN][1000 genomes]
rs11014851	0.91[ASN][1000 genomes]
rs11014863	0.92[ASN][1000 genomes]
rs11014913	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11014937	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs12241971	0.93[ASN][1000 genomes]
rs12570908	0.92[ASN][1000 genomes]
rs12570917	0.91[ASN][1000 genomes]
rs12573080	0.86[JPT][hapmap]
rs12777444	0.98[ASN][1000 genomes]
rs12779127	0.88[ASN][1000 genomes]
rs1339804	0.91[ASN][1000 genomes]
rs1339817	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs1416859	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs1416862	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1416863	0.89[ASN][1000 genomes]
rs1474216	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1538645	0.93[ASN][1000 genomes]
rs1578216	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1578217	0.88[ASN][1000 genomes]
rs1851146	0.93[ASN][1000 genomes]
rs1915477	0.95[CHB][hapmap];0.91[JPT][hapmap];0.87[ASN][1000 genomes]
rs1976828	0.88[ASN][1000 genomes]
rs2027356	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2153345	0.95[ASN][1000 genomes]
rs2204023	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2367988	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2368116	0.89[ASN][1000 genomes]
rs2368117	0.99[ASN][1000 genomes]
rs2368118	0.80[ASN][1000 genomes]
rs2368121	0.85[ASN][1000 genomes]
rs2947353	0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs3006270	0.89[ASN][1000 genomes]
rs3737275	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3758450	0.93[ASN][1000 genomes]
rs3824699	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4328138	0.90[ASN][1000 genomes]
rs4403709	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs4503431	0.90[ASN][1000 genomes]
rs4747545	0.90[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs4749083	0.91[ASN][1000 genomes]
rs4749084	0.95[ASN][1000 genomes]
rs6482520	0.95[ASN][1000 genomes]
rs6482523	0.86[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs6482524	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7068085	0.94[ASN][1000 genomes]
rs7069921	0.93[ASN][1000 genomes]
rs7071420	0.90[ASN][1000 genomes]
rs7071526	0.93[ASN][1000 genomes]
rs7073804	0.93[ASN][1000 genomes]
rs7074489	0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs7077072	0.95[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs7083201	0.86[ASN][1000 genomes]
rs7084310	0.85[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7084614	0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs7098645	0.82[ASN][1000 genomes]
rs7100118	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7100134	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7100527	0.92[ASN][1000 genomes]
rs7896398	0.88[ASN][1000 genomes]
rs7904360	0.93[ASN][1000 genomes]
rs7905199	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7908158	0.93[ASN][1000 genomes]
rs7908742	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7914361	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7914935	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs7918880	0.93[ASN][1000 genomes]
rs7920650	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7921074	0.86[ASN][1000 genomes]
rs7923264	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7923691	0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs8181447	0.90[ASN][1000 genomes]
rs9299814	0.85[ASN][1000 genomes]
rs9645527	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9663248	0.91[ASN][1000 genomes]
rs9664363	0.98[ASN][1000 genomes]
rs9665611	0.90[ASN][1000 genomes]
rs9731571	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs982082	0.80[JPT][hapmap]
rs993397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs993398	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894974	chr10:26028530-26322783	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1051756	chr10:26092320-26277478	Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26244200-26254400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr10:26249800-26252800	Enhancers	Brain Germinal Matrix	brain
3	chr10:26250800-26261200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26252200-26252600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:26252400-26252600	Enhancers	H1 Cell Line	embryonic stem cell
6	chr10:26252400-26252800	Enhancers	Pancreatic Islets	Pancreatic Islet

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