Variant report
| Variant | rs982082 |
|---|---|
| Chromosome Location | chr10:26394036-26394037 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1033308 | 0.83[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs10764597 | 0.90[JPT][hapmap] |
| rs10828940 | 0.85[JPT][hapmap] |
| rs10828943 | 0.90[JPT][hapmap] |
| rs10828947 | 0.90[JPT][hapmap] |
| rs10828948 | 0.90[JPT][hapmap] |
| rs10828952 | 0.88[ASN][1000 genomes] |
| rs11014937 | 0.90[JPT][hapmap] |
| rs11014980 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs12218737 | 0.85[ASN][1000 genomes] |
| rs12573080 | 0.81[CHB][hapmap];0.82[CHD][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
| rs1416855 | 0.80[JPT][hapmap] |
| rs1416859 | 0.84[JPT][hapmap] |
| rs1416863 | 0.88[EUR][1000 genomes] |
| rs1891382 | 0.90[CHB][hapmap];0.87[ASN][1000 genomes] |
| rs1915477 | 0.85[JPT][hapmap] |
| rs2947353 | 1.00[CEU][hapmap];0.81[CHB][hapmap] |
| rs3824699 | 0.90[JPT][hapmap] |
| rs4403709 | 0.90[JPT][hapmap] |
| rs4517423 | 1.00[CEU][hapmap] |
| rs4747545 | 0.87[JPT][hapmap] |
| rs7077072 | 0.85[JPT][hapmap] |
| rs7084614 | 0.90[JPT][hapmap] |
| rs7904196 | 0.87[ASN][1000 genomes] |
| rs7910068 | 0.84[ASN][1000 genomes] |
| rs7914935 | 0.81[JPT][hapmap] |
| rs7921616 | 0.85[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv1792417 | chr10:26263695-26395038 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv894975 | chr10:26343356-27014467 | Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:26392800-26400600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 2 | chr10:26393000-26394400 | Strong transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
